PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37617

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 500aa MW: 57106.8 Da PI: 10.5796

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37617	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.1e-08	12	48	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +++W t+E+++l av+++G+++W+ +a+++ Rt + OIT37617 12 KMNWGTWEELILGGAVRRHGTKDWNVVASELR-ARTVY 48 689*****************************.88865 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MEGETMGVGP RKMNWGTWEE LILGGAVRRH GTKDWNVVAS ELRARTVYPY CFTPEACRTR 60 YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKAE REQSGQLDYG 120 LSRTESPAPP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTDVKLERS 180 ESCERDKVPS TSKVTEVSNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST 240 SHCKEALTSC EQSIRHSAVS DHRGGLSRFR NDDLMRIFTS ITQHEAAMVF RHRLDSQKRA 300 RYKKMIRRHI DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMALRD 360 IVTRAYRQHY KSSYYKATSS LLPFPTIGNP PGKPRSVRPR PSKDKLQAKY GNNMKDIIAG 420 KVGRQNHRPG DADSKVPLQS LLSAKKGFKR PEKIKRGPII ESVNVQTKVQ AKESTQHNIK 480 VKEDHRIKPV TKERKRARQK

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MEGETMGVGP RKMNWGTWEE LILGGAVRRH GTKDWNVVAS ELRARTVYPY CFTPEACRTR  60
YEDLRKRYSG CNAWFEELRK RRVEELKREL ERSESSIGFL ESKIESLKAE REQSGQLDYG  120
LSRTESPAPP TKSEDIESFV KDEAKDGLSA GSFTLDIRTN QSPESQVPTI PSTDVKLERS  180
ESCERDKVPS TSKVTEVSNG NGGAVRKRRG KRRRKDTVWD AKEGSIEESD NVCSTSLAST  240
SHCKEALTSC EQSIRHSAVS DHRGGLSRFR NDDLMRIFTS ITQHEAAMVF RHRLDSQKRA  300
RYKKMIRRHI DIETVKSRLA SWSIKTPGEL FRDFLLLANN AMVFYSKRTR EYKAAMALRD  360
IVTRAYRQHY KSSYYKATSS LLPFPTIGNP PGKPRSVRPR PSKDKLQAKY GNNMKDIIAG  420
KVGRQNHRPG DADSKVPLQS LLSAKKGFKR PEKIKRGPII ESVNVQTKVQ AKESTQHNIK  480
VKEDHRIKPV TKERKRARQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	82	RKRYSGCNAWFEELRKRR
2	206	216	RKRRGKRRRKD
3	208	218	RKRRGKRRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	7e-13	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT37617