PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G60110.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 641aa    MW: 72045.7 Da    PI: 9.7349
Description DNA-binding bromodomain-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G60110.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-0849101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                      ++ W t+E++ l +avk++   +W+++a++++      +  ++ +c++++q++
      AT3G60110.1  49 KQVWGTWEELVLTCAVKRHAFSDWDSVAKEVQarsrssLIVSAVNCRLKYQDL 101
                      689*****************************755555333677888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.87E-644105IPR009057Homeodomain-like
PfamPF002497.5E-749101IPR001005SANT/Myb domain
CDDcd001670.0013552102No hitNo description
SMARTSM002973.1E-18292401IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-17294425IPR001487Bromodomain
SuperFamilySSF473702.49E-17295403IPR001487Bromodomain
CDDcd043693.53E-15298396No hitNo description
PfamPF004393.0E-10306385IPR001487Bromodomain
PROSITE profilePS5001412.858311382IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MKEDEEEEAV ISNGMNDDDD TNNINNSSTE FDNNRIGDGD DNSNLNQIKQ VWGTWEELVL  60
TCAVKRHAFS DWDSVAKEVQ ARSRSSLIVS AVNCRLKYQD LKRRFQDSVD VGDENTEAAA  120
NEEDEVGEIS WLEQLRSLHM AELRREVQRC DDSILSLQLK VKKLEEEKDG DDGDNKPDLK  180
NDETKPVRVN RETTESDRDD NRSMNESNST ASVDKIADHD RLDGDKMVKA NENSRNPDPD  240
PVNKAETPEE EERTVSKRSE MSNSGELDES GTSNCLGKRK GQKYRSGGGG GGVKSAGDKS  300
QPLIDIIKLI RSHPRGSVFE SRLRSQDTKD YKRLIRQHLD MKTIEKKMEK GSYVSSSLSF  360
YRDLKLLFTN AIVFFPTSSS ESIAAQELRT LVSNEMKKRT GKLGHCVIKS EAESSVSRQK  420
SSVLSLVPCK KKSSALKKTS PSSSSRQKDE KKSQEVSEEK IVTTTATTSA RSSRRTSKEI  480
AVVAKDTKTG RAKNNIKKQT DTKTESSDDD DDEKEENSKT EKKTVADKKK SVADFLKRIK  540
KNSPQKGKET TSKNQKKNDG NVKKENDHQK KSDGNVKKEN SKVKPRELRS STGKKKVEVE  600
NNNSKSSSKR KQTKETAEVA TGKRGRESGK DDKQPRKRSR R
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible251430_at0.0
Expression AtlasAT3G60110-
AtGenExpressAT3G60110-
ATTED-IIAT3G60110-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G60110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G60110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567092.40.0DNA-binding bromodomain-containing protein
TrEMBLQ93ZQ20.0Q93ZQ2_ARATH; AT3g60110/T2O9_90
STRINGAT3G60110.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Representative plantOGRP38051123
Publications ? help Back to Top
  1. Pandey R, et al.
    Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
    Nucleic Acids Res., 2002. 30(23): p. 5036-55
    [PMID:12466527]
  2. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  3. Yamaoka S, et al.
    Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development.
    Plant Cell, 2013. 25(8): p. 2958-69
    [PMID:23975897]