PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37295
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 688aa    MW: 77087.8 Da    PI: 9.2939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37295genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07584633147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
         OIT37295 584 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 633
                      6789999*******************9988889999***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MSSKKRLNYG FSGYQFPVIP KAPRSVRRRH SHNNLDNNQI CAFELLAAVA GELLQESESS  60
ACSNAAEGKD ELADCRVGVK CEQLKEDKAV KSECFSQGSC VESTYIPEPA ALEQNLKHSL  120
DKPNHVENNI FHKHNCSIMN ADFSQKDWSC AKLENCKKVD RGGMFHSEVE GRSSNLGNAC  180
NKKIETVTQK QLDDDRKQTD DLTVANSCSV KGPIVEHVNN NATINSDNSV QFPLYRAVPK  240
PSFGKQRNNV KLGIRDDDEN SFRSYSHSSK IRAFRKTSRI GYRRIKRILT SRHWKIAPQL  300
KDCERSCFNN RVKSFYQNRK RICALERCRV EIPSKRRKMS HYNSDVAYDQ QASSERKSNS  360
PEKGIKRDII PHRGSGASAS AKNHQKKDPC VKFSIKSFNI PELFIEVPET ETVGSLKRSV  420
MEAVRSILGN GLRVGVVLEG KKVRDDNRTL QQAGVSQNGN LDTLGFTLEP SFYPVSPSLL  480
SKDPPASSPC VADHELTRRP PSPILELELP SASSDPSKTK LDKHDEDYHE LAQSPTNPID  540
PTSDVAIPDS RAVVIIPHLN AEALAVVPGS PKNSRSELSQ RRIRRPFSVA EVEALVEAVE  600
QLGTGRWRDV KIRAFEYADH RTYVDVKDKW KTLVHTASIT PQQRRGEPVP QELLDRVLAA  660
HAYWSQQHGK QHAEALKMAD SQVQNVGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319338RKRICALERCRVEIPSKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.15e-97MYB_related family protein