PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37292

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 351aa MW: 38391.5 Da PI: 7.01

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37292	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y ++C+FaHg OIT37292 93 FKTKLCCKFRA-GVCPYINNCNFAHG 117 69*******.***********8 PP
2	zf-CCCH	17.7	6.2e-06	173	196	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ f+ C+yGd+C+F H+ OIT37292 173 GRHCKKFYTEEGCPYGDTCTFLHD 196 5669***9***********7 PP
3	zf-CCCH	43	7.7e-14	230	255	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIT37292 230 WKTRICNKWETTGYCPFGSKCHFAHG 255 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDFMGEASFA GGNMIPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRDWNTG PSSETPSSSN 60 RSGSEPPHKK SRSSQGADSH VTSRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE 120 LRKPPPNWQE IVAEHESEHG GGGGVMLEFR EEHQIPTVSS PELRIETQRS FKGRHCKKFY 180 TEEGCPYGDT CTFLHDEQSR ARESVAISVT PTVGGFGNNA AGANLKPSNW KTRICNKWET 240 TGYCPFGSKC HFAHGAAELH KYGGGLMETE GKDPLSTPPD LRQGGGSLKT TESTVPSTIS 300 APHTDVYHLG PGIQVQRSSG IVQRAGHRVI QKWKGPDKIS KIYGDWIDDI E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDFMGEASFA GGNMIPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRDWNTG PSSETPSSSN  60
RSGSEPPHKK SRSSQGADSH VTSRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE  120
LRKPPPNWQE IVAEHESEHG GGGGVMLEFR EEHQIPTVSS PELRIETQRS FKGRHCKKFY  180
TEEGCPYGDT CTFLHDEQSR ARESVAISVT PTVGGFGNNA AGANLKPSNW KTRICNKWET  240
TGYCPFGSKC HFAHGAAELH KYGGGLMETE GKDPLSTPPD LRQGGGSLKT TESTVPSTIS  300
APHTDVYHLG PGIQVQRSSG IVQRAGHRVI QKWKGPDKIS KIYGDWIDDI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-118	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT37292