PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36774
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 927aa    MW: 102471 Da    PI: 5.3502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36774genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24146247199
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++ +l+++
  OIT36774 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEKSQLMLG 243
               99*********************999*****9555554.49************************************************..4567778*** PP

               EE-S CS
        B3  96 vfrk 99 
               v+r+
  OIT36774 244 VRRA 247
               9997 PP
2Auxin_resp118.45.9e-39272355183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
    OIT36774 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRCLQ 355
                 79**********************************9**********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGRKLI NSELWHACAG PLVTLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVNSERDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL  240
MLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA  300
KYRKSVYGTQ LSVGMRFGMM FETEESGKRR YMGTIVGISD LDPLRWPGSK WRCLQAEWDE  360
PGCGDKQSRV SPWEVETPES LFIFPSLTAG LKRPYQSSFL GAQTEWDSLM HRPFMRVPEN  420
VYGELQSSSI SNLWSEQLMK MLARPPGVTG LQCGVPTVQD IKVALPQESR NLIHAAGNQK  480
PELSTVEDTS VQNERNPQVI LNQPCVVNSI SSPQATLQPK SQPPEKVGSD TVGISSEPAK  540
ETSVSVDRLD QCQSLGQCNE EKVTIKPASP HILPADATAS HQNSLSQLQS SPWRQIEAAS  600
ANNILQCSNN NEWNLPSFQS TAGLLRSPVS NSTLTKHEHS FMLPDSVIGP GLAPIGQDLW  660
DHQLNDVKCF SQSNLQVPLL TQDITNMQFL PDSYGFKDLS EESHNQSDIY SCLNFDSNSG  720
STVIDNSVSS TVLDEFCTLK HTDFQSPSDF LLGNFSSSQD VQSQITSASL ADSQNFSVQD  780
FADNSGGASS SNVNFDESNL LQNSSWQQVA PRVRTYTKIQ KAGSVGRSID VSSFKTYDEL  840
RSEIERMFGL EGLLNDTRGS GWKLVYVDYE NDVLLVGDDP WEEFVGCVRC IRILSPTEVQ  900
QMGEEGMQLL NSAGLQGING STSEFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein