PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36505
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 375aa    MW: 43185.9 Da    PI: 8.3656
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36505genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.8e-401302492136
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102
               +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++  + ++ c++ ++             ++++  + +++
  OIT36505 130 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELSRNIPQENNTCSDRNNIM-----------SESHILECEDH 219
               79**************************************************************666666772222222...........22332222222 PP

       TCP 103 saasalnlak.esrakarararertrekmriknkl 136
                    ++l+k e + k ra+are+t+e+m+ik ++
  OIT36505 220 -----RKLKKmELKDKPRAKARENTKENMMIKGHK 249
               .....334444556667777777899999998665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MFPKSNINDP FSYTSQELLK HSYTHDAHYQ NPNSSSIIVE DHPFFLNNFP SPFLDHHESP  60
LSQIFSHQQQ QQQELEPSDH HPDAEVDPDT SRFGRANVKI IEDQSSNPNA EPVSPSSKKR  120
KLSAKPRRRT GKKDRHSKIC TAQGVRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF  180
SKSKNAIKEL SRNIPQENNT CSDRNNIMSE SHILECEDHR KLKKMELKDK PRAKARENTK  240
ENMMIKGHKK GKEMYEANPK NVNKLGSNSQ SLENKFANVG IMESYLGGTS SSISSIFDYE  300
NSGVRGGNID YFDNCYMGFL ENWDNKNSNI NCSTTTTNEV QIPFAGNNNT SSIYLDNSRY  360
QFQFLDQENH FSCRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118129KKRKLSAKPRRR
2119130KKRKLSAKPRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-32TCP family protein