PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35281
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 275aa    MW: 30525.9 Da    PI: 9.7529
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35281genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     + +WT eE+  l+ +v+++G+g+Wk I r        ++R+  ++k++w++
         OIT35281  5 KVKWTSEEEGALKAGVAKHGTGRWKNILRDPEfarflTNRSNIDLKDKWRN 55
                     579***********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGNHKVKWTS EEEGALKAGV AKHGTGRWKN ILRDPEFARF LTNRSNIDLK DKWRNMGFST  60
AAQGSKDKSR FSRARPKTIS ALVPSTVQTP LAITSAPEND AMDGSPESPQ GSKNAPKYND  120
MIFEALSSMK CSNGCDLGAI VGFIEQRHEV PQNFRRLLSS KLRRLVLKGK LERVQNCYKI  180
KDATLETKIT TPKQKDVLPR PAPNSAVKVS CETMEEAVGI AAYKIADAEE RSFLAAEAVN  240
NAERLSKMAE DAESMFQLFK EIYEQCSRGQ IVLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-63MYB_related family protein