PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33955

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HRT-like

Protein Properties

Length: 480aa MW: 53471.6 Da PI: 10.0993

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33955	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.1	9.3e-16	272	302	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC+r+P+ g+ RC++HKGm++ OIT33955 272 ICGVALGHGSVCMRPPITGNIRCAKHKGMKV 302 8****************************97 PP
2	HRT-like	44.8	2.1e-14	335	364	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G +C r+P + +KRC eHKG+R OIT33955 335 ICGFILDGGAPCARKPFQRNKRCLEHKGRR 364 8****************************9 PP
3	HRT-like	66	4.8e-21	421	451	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dGs+C+rqPv gRKRCeeHKGmR+ OIT33955 421 ICGVHLTDGSFCTRQPVAGRKRCEEHKGMRV 451 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT 60 SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN 120 SALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPMNDNKD AEKTESQLLD RFDYAWNKGS 180 NGVRRHNDVL QKLDGISRAT RLPAFVRKLQ LSLEKQKGVR IKPCKPLLLE NGSDFHDSFK 240 STYFLPQIFK FGRSKPRIVS LSSGVNGDPN TICGVALGHG SVCMRPPITG NIRCAKHKGM 300 KVNGVNSKLI AEGNSSVINE STRPCASRGE ENAPICGFIL DGGAPCARKP FQRNKRCLEH 360 KGRRNRGCIS QPVTDKNGQS ILEYRTYSSN DCHQMLSRRA DTQHPQDFSS CPLINQNHNV 420 ICGVHLTDGS FCTRQPVAGR KRCEEHKGMR VKEPISKQLG SEIPSVFAGP AAKSSSGKKH

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT  60
SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN  120
SALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPMNDNKD AEKTESQLLD RFDYAWNKGS  180
NGVRRHNDVL QKLDGISRAT RLPAFVRKLQ LSLEKQKGVR IKPCKPLLLE NGSDFHDSFK  240
STYFLPQIFK FGRSKPRIVS LSSGVNGDPN TICGVALGHG SVCMRPPITG NIRCAKHKGM  300
KVNGVNSKLI AEGNSSVINE STRPCASRGE ENAPICGFIL DGGAPCARKP FQRNKRCLEH  360
KGRRNRGCIS QPVTDKNGQS ILEYRTYSSN DCHQMLSRRA DTQHPQDFSS CPLINQNHNV  420
ICGVHLTDGS FCTRQPVAGR KRCEEHKGMR VKEPISKQLG SEIPSVFAGP AAKSSSGKKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-93	HRT-like family protein

Link Out ? help Back to Top
Ensembl	OIT33955