PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT33763
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 263aa    MW: 29786.8 Da    PI: 8.2409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT33763genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.4e-10126148123
               --S---SGGGGTS--TTTTT-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
               y   +C+++ +tG+C yGd CkF
  OIT33763 126 YQPDICKDYKETGYCGYGDACKF 148
               67789****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MKKKPAIADF STGPPKCNKA PLFYFESPKE ITVQNDSRAT ASLETETEFS KDARAIRERV  60
LKLGEEAIKG KSKSSGDQPL YKGMNQYTDY KAGLRREHTI SSEKACGAHG PLRASAHIRV  120
STRFDYQPDI CKDYKETGYC GYGDACKFLL DRGDCKSGWQ LEKEWEEAEN ERKRKLAMGM  180
LDEDGENAEK SDEDDDNSLP FACFICRQPF VDPVVTKCKH YFCVHCALKH HAKNKKCFVC  240
NQPTLGIFNT ALEIRKRMAV QGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-121C3H family protein