PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33061

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 468aa MW: 51086 Da PI: 6.2812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33061	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W+ I +++g ++t+ q++s+ qk+ OIT33061 55 REKWTEEEHQRFVEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 99 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MVAEALNQDE GARRGGSSMI SSKLETVATQ GKALTCLANE ITLKVRKPYT ITKQREKWTE 60 EEHQRFVEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSGTD GDESLNAIDI 120 PPPRPKKKPL HPYPRKMADS PVTNKSVSAQ PERSPSPNAS RRGSCSPDSV LSEIGSDVSE 180 YPVAEQQSSR FSPRSCTTDA HTANIISGQN DDESMTSKSN IVKEIPVASK PVAASSSSIF 240 NSGMECDFVP RETSCPGEKV AVEAPLANIK LFGQMVLVPD ATKLALQSPA GSCNSLPSKT 300 TEDEIGANYG NVIHGFQANS QFILPVVPGN MIPSACWLSQ DMLENNPEGV AAFPTTLPWW 360 SWYQDLVYRY ISSCSQTAAE TATPCQRPKN EEAQREGSST GSSTGSASEV DDGNRSSETV 420 ESKYTTKSDK WNNSKGFVPY KRCLAERDGM TSGVELEERE SQRVRVCS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MVAEALNQDE GARRGGSSMI SSKLETVATQ GKALTCLANE ITLKVRKPYT ITKQREKWTE  60
EEHQRFVEAL KLYGRAWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSGTD GDESLNAIDI  120
PPPRPKKKPL HPYPRKMADS PVTNKSVSAQ PERSPSPNAS RRGSCSPDSV LSEIGSDVSE  180
YPVAEQQSSR FSPRSCTTDA HTANIISGQN DDESMTSKSN IVKEIPVASK PVAASSSSIF  240
NSGMECDFVP RETSCPGEKV AVEAPLANIK LFGQMVLVPD ATKLALQSPA GSCNSLPSKT  300
TEDEIGANYG NVIHGFQANS QFILPVVPGN MIPSACWLSQ DMLENNPEGV AAFPTTLPWW  360
SWYQDLVYRY ISSCSQTAAE TATPCQRPKN EEAQREGSST GSSTGSASEV DDGNRSSETV  420
ESKYTTKSDK WNNSKGFVPY KRCLAERDGM TSGVELEERE SQRVRVCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	1e-38	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT33061