PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31440

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 494aa MW: 54762.1 Da PI: 6.5908

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31440	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	157	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT31440 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*****************......55**********************997 PP
2	AP2	41.1	4.3e-13	249	299	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g OIT31440 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 299 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MMLDLNLSAI YDEKVPEGSV ADESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDI 60 LKVGGAETSR SCSNNDDDQD GYGENRRVTQ SEFVTRQLFP LDGSHTSREP DWVDLSFDPP 120 NTVSFREAEI VRAQQQQQQQ QPQQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYEE DMKQMKSLSK EEFVHVLRRQ 240 STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR 300 EAVTNFEPST YEGETISNPQ SAGSQQDLDL NLGIATSSPK ENERMGSFQY HPYDMQDATK 360 SQMDKSGPAI VGSSHFKAQP VTSEQAHLWN GVYSNFFPSY EERASGKRID IGSSQGRPNW 420 ALQMHGQVGT TPMSMFTAAA SSGFSTPATT ASASPMSGPN ANTNTPNLSF ASYSTPSTNT 480 THYYYQIRPP LPHP

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MMLDLNLSAI YDEKVPEGSV ADESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDI  60
LKVGGAETSR SCSNNDDDQD GYGENRRVTQ SEFVTRQLFP LDGSHTSREP DWVDLSFDPP  120
NTVSFREAEI VRAQQQQQQQ QPQQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYEE DMKQMKSLSK EEFVHVLRRQ  240
STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR  300
EAVTNFEPST YEGETISNPQ SAGSQQDLDL NLGIATSSPK ENERMGSFQY HPYDMQDATK  360
SQMDKSGPAI VGSSHFKAQP VTSEQAHLWN GVYSNFFPSY EERASGKRID IGSSQGRPNW  420
ALQMHGQVGT TPMSMFTAAA SSGFSTPATT ASASPMSGPN ANTNTPNLSF ASYSTPSTNT  480
THYYYQIRPP LPHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-117	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT31440