PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30764

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 466aa MW: 51702.1 Da PI: 8.3664

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30764	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	7e-17	144	193	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT30764 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 193 78*****************......55**********************997 PP
2	AP2	39.8	1.1e-12	236	286	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g OIT30764 236 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKTNG 286 79******.7**5553..2.26******99********98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MLDLNVNVIY DENYIVDEKL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCSTRAGN 60 LFAFNFGILK FGGVDATSRS NEFVTRQLFP IHDGELNRPG QTDRVNFSSG RSGFGDERTV 120 LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHTA 180 ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKDLGKEEF VHLLRRHSNG FSRGSSKFRG 240 VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKTNGREAV TNFEPSAYEG 300 ETTSEPQKEG SQHDLDLNLG MSTFSSKEND KLGGSYYRPY YMQDATKSKM DKPGPVIVGS 360 SHLKGLPLTS KQAHLWSGAY SDFSPTYEGR ASDKRKDIGS SQGPSNWALQ MPRQVDTAPV 420 SMFYTAASSG FLTPATAFIT SSASPVAPST NASQYYYQFS PYVPPP

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MLDLNVNVIY DENYIVDEKL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCSTRAGN  60
LFAFNFGILK FGGVDATSRS NEFVTRQLFP IHDGELNRPG QTDRVNFSSG RSGFGDERTV  120
LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHTA  180
ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKDLGKEEF VHLLRRHSNG FSRGSSKFRG  240
VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKTNGREAV TNFEPSAYEG  300
ETTSEPQKEG SQHDLDLNLG MSTFSSKEND KLGGSYYRPY YMQDATKSKM DKPGPVIVGS  360
SHLKGLPLTS KQAHLWSGAY SDFSPTYEGR ASDKRKDIGS SQGPSNWALQ MPRQVDTAPV  420
SMFYTAASSG FLTPATAFIT SSASPVAPST NASQYYYQFS PYVPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-111	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT30764