PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30755

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 1108aa MW: 124119 Da PI: 6.5697

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30755	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.4e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F + +++ +l++ OIT30755 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DEKSQLLL 222 99***************************954.5444.48**********************************************4..46666788 PP EEE-S CS B3 95 kvfrk 99 ++ r+ OIT30755 223 GIKRA 227 88765 PP
2	Auxin_resp	123	2.2e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++gvsdldp+rW+ S+Wr+L+ OIT30755 252 AAHAAANNSPFSIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPIRWKSSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MKAPSNGYIA NSGEGDKKVM NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALI LSDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMARD LHDQAWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFSIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFPKQPGFP GDESDIENAL KRGMPWISDE FGLKDAPSSI FPGLSLVQWM 420 SMQQNNHNPV AQSGLPNVLH SNIGTDDHSK LLSFQSPTPG LQFNKPNQLN QQFGQIQQPQ 480 LAWPQQQQQS LQSPPSAQQQ QHTQQQQQHT QQQQQQPPQH MLQQPPQPLP QPQLHQQAQQ 540 QLHQQQRGPQ QQLHQQQRGP QQQQLTVNSP PVNNCISPNQ MPNQSFPQAS IYAQLQQQQL 600 LSASNQSQQN VPVNKNPFLS TSSAQDFPFQ QQAEQQSNLL QKSQQQQQII PQQAPLQLLQ 660 QSLMQRPQVQ TSSQQSLTEQ QLQLQLLNKL QQQQQQLQQQ QQQQLQQQAQ QLSHVSSTLE 720 PRMPQQQQNR QPQELQFGHQ QFSSNIMTTA THLQSPQHAF NQLQGQNKSP ITIRALSGAT 780 DGDAPSCSTS PSTNNFQVSP QNFLTRNQGQ AILVDESVVD PSQEQNKSEF RMKHELPFSK 840 SSEQSKYKGN GTENLEAASS TTSYGLDSSG FNFSLPALCA EGDVQSHSRN NLPSAANIDG 900 LTSDALLSRD YDSGKDMQNL FSPFGNTPRD IETELSAAGI NSQQFGVPNM SYQPRCSNDL 960 AVNDNGVVNN NSWTNQTQRM RTYTKVQKRG SVGRTIDVTR YKGYDELRHD LARMFGIEGQ 1020 LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSVKI LSSAEVQQMS LDGDLGNVQV 1080 PNQANSGTDS GNAWRGHYDD NSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MKAPSNGYIA NSGEGDKKVM NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALI LSDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFSIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQPGFP GDESDIENAL KRGMPWISDE FGLKDAPSSI FPGLSLVQWM  420
SMQQNNHNPV AQSGLPNVLH SNIGTDDHSK LLSFQSPTPG LQFNKPNQLN QQFGQIQQPQ  480
LAWPQQQQQS LQSPPSAQQQ QHTQQQQQHT QQQQQQPPQH MLQQPPQPLP QPQLHQQAQQ  540
QLHQQQRGPQ QQLHQQQRGP QQQQLTVNSP PVNNCISPNQ MPNQSFPQAS IYAQLQQQQL  600
LSASNQSQQN VPVNKNPFLS TSSAQDFPFQ QQAEQQSNLL QKSQQQQQII PQQAPLQLLQ  660
QSLMQRPQVQ TSSQQSLTEQ QLQLQLLNKL QQQQQQLQQQ QQQQLQQQAQ QLSHVSSTLE  720
PRMPQQQQNR QPQELQFGHQ QFSSNIMTTA THLQSPQHAF NQLQGQNKSP ITIRALSGAT  780
DGDAPSCSTS PSTNNFQVSP QNFLTRNQGQ AILVDESVVD PSQEQNKSEF RMKHELPFSK  840
SSEQSKYKGN GTENLEAASS TTSYGLDSSG FNFSLPALCA EGDVQSHSRN NLPSAANIDG  900
LTSDALLSRD YDSGKDMQNL FSPFGNTPRD IETELSAAGI NSQQFGVPNM SYQPRCSNDL  960
AVNDNGVVNN NSWTNQTQRM RTYTKVQKRG SVGRTIDVTR YKGYDELRHD LARMFGIEGQ  1020
LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSVKI LSSAEVQQMS LDGDLGNVQV  1080
PNQANSGTDS GNAWRGHYDD NSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT30755