PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30701

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 361aa MW: 39827.5 Da PI: 8.5094

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30701	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.6	3.9e-20	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + OIT30701 16 KGPWSPEEDDLLQQLVHKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	57	4.4e-18	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ OIT30701 70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MANSSNSSKK DMDRVKGPWS PEEDDLLQQL VHKHGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKSSSL 120 SADEGNELAD QIFQNQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSH 180 LFKPVARAGG VFPPPSIDTS SPSDDPPTSL SLSLPGVDLT EFSNRSAEST QLKNPFQMLP 240 VAMQIPPPPP PPPQAAAVSF QRAPLNQEAA AEQQDKVFVP FSQELLGVMQ EMIKAEVRNY 300 MVGIEQQQFQ QQQQRHYQQQ QQFQQQNHQM PSGIGLGLCM QQATDGFRNT GANRMGVSKI 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MANSSNSSKK DMDRVKGPWS PEEDDLLQQL VHKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKSSSL  120
SADEGNELAD QIFQNQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSH  180
LFKPVARAGG VFPPPSIDTS SPSDDPPTSL SLSLPGVDLT EFSNRSAEST QLKNPFQMLP  240
VAMQIPPPPP PPPQAAAVSF QRAPLNQEAA AEQQDKVFVP FSQELLGVMQ EMIKAEVRNY  300
MVGIEQQQFQ QQQQRHYQQQ QQFQQQNHQM PSGIGLGLCM QQATDGFRNT GANRMGVSKI  360
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	4e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT30701