PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30385
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 436aa    MW: 49735.4 Da    PI: 5.1381
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30385genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.2e-35241142101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ ++sw++ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F +g+++ll++i 
      OIT30385  24 FLSKTYELVDDPYTNPVVSWNHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFLRGQRHLLKNIY 111
                   9***************************************************************9998.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
      OIT30385 112 RRK 114
                   *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MVGIMMENCN GGSSSAPAPA PAPFLSKTYE LVDDPYTNPV VSWNHNGRSF VVWNPPEFAR  60
DLLPKYFKHN NFSSFIRQLN TYGFRKVDPE QWEFANEEFL RGQRHLLKNI YRRKPIHSHS  120
TTGSQSVAPL TDSERQEYEE EIERLKRENS LLQSSAEKHE KFNQEYEFGV KSMEQRLQNI  180
VHRQGKLISL LAQLLQRPEF SSDLIQYTNN NSKKRRLLVS NCLIEEENAT NSIVVPKLDM  240
DIVKKLDSSI NFWERFLYGI RNSTPTKDQM HDFEHTQVLP SPIVIREMDT SSDDSGKRNS  300
PIDHSSSPSR DIQSSPELEG PLSPVISSIY INLECQLKPS DQSNASIDAT KNQVEGSTDM  360
SKSVSNSGND VFWQQFLTET PGLSEPQEVE IVSKDTNGLT CDTMLAEENQ RYWWSRGFNV  420
ENLAERMGLL SPATGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-65HSF family protein