PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G18880.1 | ||||||||
Common Name | AT-HSFA4A, F13C5.50, HSF15, HSF21, HSFA4A, HSF A4A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 401aa MW: 46244.6 Da PI: 5.1675 | ||||||||
Description | heat shock transcription factor A4A | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.1 | 1.6e-34 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+ weF+++ F +g+ +l+++i+ AT4G18880.1 16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKNIH 103 9**************************************************************99988.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k AT4G18880.1 104 RRKP 107 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.08E-35 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.6E-63 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.3E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.0E-31 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF58113 | 7.06E-5 | 96 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK 60 HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSLPNLQAQL 120 NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM 180 VSFVSQVLEK PGLALNLSPC VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP 240 SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV 300 DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV 360 QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.1951 | 0.0 | flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 254592_at | 0.0 | ||||
Expression Atlas | AT4G18880 | - | ||||
AtGenExpress | AT4G18880 | - | ||||
ATTED-II | AT4G18880 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of Heat Stress Transcription Factor (Hsf) family | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G18880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G18880 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G18880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY125512 | 0.0 | AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds. | |||
GenBank | BT001049 | 0.0 | BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_193623.1 | 0.0 | heat shock transcription factor A4A | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A178UUP9 | 0.0 | A0A178UUP9_ARATH; HSF A4A | ||||
STRING | AT4G18880.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 | Representative plant | OGRP5235 | 10 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT4G18880.1 |
Entrez Gene | 827622 |
iHOP | AT4G18880 |
wikigenes | AT4G18880 |