PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29263

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 645aa MW: 73841.1 Da PI: 8.2115

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29263	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	439	480	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e + +k++G++ Wk a ++g + + ++k+ w+ + OIT29263 439 KWTEEEYEMVRKFHKEHGNN-WKVLADELG--KHRFHVKDTWRRL 480 8***************99.******9..6788899888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MVIGDEKLDM LPKKEKKSKK SNKNAATSGP GVVVADVKML DGDFSFEVEK LSVVETKKER 60 NNAKLETKTI GESDDCDIKR KKKKKREGGT HHGKSTEGSD EDVAISVEKK KPNKLKRSHQ 120 DERELILDAP LDTKTTAHVS VSETRDNKKV VEILSEVSGG DAVEETRRKK KSKKSNNNAR 180 TTDVGLPNSD VRAVEGDLSL EEEKLCIVKT KEKNEKVNKE TKAAGESEDY DVKRKKGKKG 240 RTFKDGAEAA LESVEEKKSK KLKKSCRDEL GRMHDIEDGQ GDIVTEVNQG DISSTVEEME 300 EQSRTDTGNI RKRKKAMLGH SSEDPTHEKS EKRVRFSGHV QIFPSSGDPS DENHETEEEN 360 LLRGKRFSKL EDEIVKEAVH KYIDIHNLGE EGLQKILNSR SNPEVKGCWK EIGGAIPYRP 420 YTAVYYRAQV LFRRSETRKW TEEEYEMVRK FHKEHGNNWK VLADELGKHR FHVKDTWRRL 480 KLANKKKGQW SQEEYQTLFD LVNTDLKLKL SEEKKSKHGM LRDNIAWGAI SDRLSTRTDA 540 TCCLKWYDQL TSPMVAKGEW ADTDDYRLVD ALFELDASCI EDVDWDNLLD HRPGEICRKR 600 WNQMVLHIGQ HGNRSFAEQV DVLAKRYRPE LVEVREAWDS KPVIP

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MVIGDEKLDM LPKKEKKSKK SNKNAATSGP GVVVADVKML DGDFSFEVEK LSVVETKKER  60
NNAKLETKTI GESDDCDIKR KKKKKREGGT HHGKSTEGSD EDVAISVEKK KPNKLKRSHQ  120
DERELILDAP LDTKTTAHVS VSETRDNKKV VEILSEVSGG DAVEETRRKK KSKKSNNNAR  180
TTDVGLPNSD VRAVEGDLSL EEEKLCIVKT KEKNEKVNKE TKAAGESEDY DVKRKKGKKG  240
RTFKDGAEAA LESVEEKKSK KLKKSCRDEL GRMHDIEDGQ GDIVTEVNQG DISSTVEEME  300
EQSRTDTGNI RKRKKAMLGH SSEDPTHEKS EKRVRFSGHV QIFPSSGDPS DENHETEEEN  360
LLRGKRFSKL EDEIVKEAVH KYIDIHNLGE EGLQKILNSR SNPEVKGCWK EIGGAIPYRP  420
YTAVYYRAQV LFRRSETRKW TEEEYEMVRK FHKEHGNNWK VLADELGKHR FHVKDTWRRL  480
KLANKKKGQW SQEEYQTLFD LVNTDLKLKL SEEKKSKHGM LRDNIAWGAI SDRLSTRTDA  540
TCCLKWYDQL TSPMVAKGEW ADTDDYRLVD ALFELDASCI EDVDWDNLLD HRPGEICRKR  600
WNQMVLHIGQ HGNRSFAEQV DVLAKRYRPE LVEVREAWDS KPVIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	85	KRKKKKK
2	79	114	KRKKKKKREGGTHHGKSTEGSDEDVAISVEKKKPNK
3	80	86	KRKKKKK
4	80	115	KRKKKKKREGGTHHGKSTEGSDEDVAISVEKKKPNK
5	80	87	RKKKKKRE
6	81	111	KKKKKREGGTHHGKSTEGSDEDVAISVEKKK
7	81	116	KRKKKKKREGGTHHGKSTEGSDEDVAISVEKKKPNK
8	82	112	KKKKKREGGTHHGKSTEGSDEDVAISVEKKK
9	83	113	KKKKKREGGTHHGKSTEGSDEDVAISVEKKK
10	233	263	KKKKKREGGTHHGKSTEGSDEDVAISVEKKK
11	311	315	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-126	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT29263