PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28114
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 268aa    MW: 30520.2 Da    PI: 6.7919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28114genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
         OIT28114 15 KGLWSPDEDDKLKNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding56.37.3e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+e ++ +++++G++ W++Ia++++ gRt++++k++w++yl
         OIT28114  68 RGAFSLDEEETILTLHAMFGNK-WSKIAQHLP-GRTDNEIKNHWHSYL 113
                      89********************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGCKLVDKTK QKHKKGLWSP DEDDKLKNYI IKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSLDEEETIL TLHAMFGNKW SKIAQHLPGR TDNEIKNHWH SYLKKRVAKM  120
AQQTTSGNRE SSPCSKKLTP QHSSFDSFEG SLADSDQSAD IPRETQKSNL PKVLFAEWLS  180
LDQFNGQDNF DPSNYNFGYN NSELQDIFMH SIPMIGGSYV NGINQEVNNG IVDDIFQTQL  240
KFEESISANG FEEFMSGEFS INDDVMYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-62MYB family protein