PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27598
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 342aa    MW: 38422.8 Da    PI: 6.7719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27598genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12205230126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               y   +C+++ +tG+C yGd+CkF+H+
  OIT27598 205 YQPDICKDYKETGYCGYGDSCKFMHD 230
               67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MENSNTPAFE SNPAEAETEQ PPTAPPSSSS VCNFFKKPSK GKNIRKRPTV EEGENDDADG  60
ESSVIYTKKK PAIADNKLRF STGGSKCNKA TESNVDSKAP IFHFESSKEI QVQNDSRATA  120
TLETETEFSK DARAIRERAL KQAEEALKGK SKTGGDEKLY KGMNQYTDYK AGLRREHTIS  180
SEKAGGAHGP LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQI  240
EKEWDEAEKE RKRKLAMGML DEDDEDAEKS DEDDDDALPF ACFICREPFV DPVVTKCKHY  300
FCEHCALKHH AKNKKCFVCN QPTLGIFNTA FEIRKRMAAQ GK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein