PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27388
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 585aa    MW: 64109.2 Da    PI: 5.5377
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27388genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24118220199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+ltpsd+++ g +++p+ +a+++        +++ +   l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF ++  +++el+v
  OIT27388 118 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvAEPPVQ--NLSIRDIHGCVWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSAVFARKT-NTGELYV 215
               89*********************999*****98666667..6************************************************544.9999*** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +v+r+
  OIT27388 216 GVRRA 220
               ***97 PP
2Auxin_resp84.32.6e-28264347183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++Fev  +Pra++++Fvv++e ve++ +v ++vGmR+kma+etedss++ + +Gtv++v+  ++  W++S+Wr+L+
    OIT27388 264 AAEMAARGMAFEVSCYPRAGWADFVVRAEAVEASSTVFWTVGMRVKMAVETEDSSRTACfQGTVSSVNLPQSGPWRGSPWRMLQ 347
                 6889999***************************************************99**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    
MPPSTTAVPA VSNDVDPTVW KAIAGNSVEI PTVGTRVYYF PQGHAEHANC GSPIFLSSLI  60
PPFILCRVLS VRFLADSVTD EAYAKIFLLP INQSEDNNNV AVNMNGDVED AENEVVSFVK  120
ILTPSDANNG GGFSVPRFCA DSIFPRLNFV AEPPVQNLSI RDIHGCVWEF RHIYRGTPRR  180
HLLTTGWSKF VNSKKLVAGD SAVFARKTNT GELYVGVRRA TRGNDICERW NSTVLRSTEQ  240
TSSGGEVRWR TGQGRVATEA IVEAAEMAAR GMAFEVSCYP RAGWADFVVR AEAVEASSTV  300
FWTVGMRVKM AVETEDSSRT ACFQGTVSSV NLPQSGPWRG SPWRMLQITW DEPEVLQYAK  360
RVNPWQVECI LPTPQLHSGF PPSKKIKLPN GLLPDGEEKF FFPMTGLSNP LIGLCSPSLG  420
NYTSFPAGMQ GARQNQICVS SLSNVKSNNN FGLGTDNSLD EEFKPKLESV STKLNIGSSY  480
SDNFSPDSQS SVHFWDNELV TKPGSSSLTK VRINSFQLFG KVIHVEPVEG GFDGFGCSEN  540
DSIEVFKEID GAVKSNISLS KPYIELFDSI DVQHQRASAV EACSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-170ARF family protein