PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27079
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 37148.4 Da    PI: 4.93
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27079genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-102572971055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  OIT27079 257 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVLYVKFLQ 297
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MEPVASISGE WSSFSGMCLT DEADFMAQLL GNCSLPNELP CSSNFGVSSA YWTGHESNMN  60
MGGAREVSVY SSNKTNNSMY IDGSSFLFSP SSHENYYSSH YRPILMRNDS SITVEHGLVD  120
TNNPIEADDF LNQDVSNDSM EFDENMPEAA LDGKGLQLGR TDYEQFSEDK MDSPSESSKK  180
RSRLHGLEHV PKNKRSAKLE KDLKSGEMDG KNKVVLQRQN STISCCSEDE SNVSHVLTRK  240
TRANRGSATD PQSLYARKRR ERINERLRTL QTLIPNGTKV DISTMLEEAV LYVKFLQLQI  300
KLLSSDDLWM YSPIAYNGMD IGLDLRIDIP K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-52bHLH family protein