PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26579
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 272aa    MW: 31099.3 Da    PI: 4.5435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26579genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+ll++++++ G ++W++ ++  g+ R++k+c++rw +yl
         OIT26579 14 RGPWSKEEDDLLINYINKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding47.34.7e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+  ++++++ lG++ W+ Ia++++ gRt++++k+ w++
         OIT26579  67 RGNFTPEEENTIIKLHQVLGNR-WSGIAARLP-GRTDNEIKNIWHT 110
                      89********************.*********.*********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRAPCCEKL GLKRGPWSKE EDDLLINYIN KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TPEEENTIIK LHQVLGNRWS GIAARLPGRT DNEIKNIWHT RLKKRADDKS  120
QPQQTQEIQD QQTMETSKSE ENLVTHSSEP ENSEEISSPK TNFQIQQHPN SSSSTSFSGD  180
SCSNTTATSM STSSLADESR DQILLDNLLE VDDNFWSEVL WAPAETNDYN LSDLSFSSLE  240
ENYELNSSLN DNWFWDDLFS TANELMLELP EL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-71MYB family protein