PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT26319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 47247.6 Da PI: 8.6799 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 1.9e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p OIT26319 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 40.1 | 5.9e-13 | 93 | 118 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OIT26319 93 GQPECQYYLKTGTCKFGATCKFHHPK 118 5799********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OIT26319 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164 689********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 2.9e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OIT26319 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.8e-13 | 339 | 365 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OIT26319 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence |
MDFDAGISLS VTEGPSSLSP SLHQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSG QMGSVSSPEG 240 QQQTAGNSQV YGTSRSGDAA NMGSQGVTSP YRPASVPMGY YALQGENVFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SISASSTTDA PTVQRLLGST SGTSALTLTS DGLVEAVSTK PRRLSLSETR 420 KMPPGDNNID REG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT26319 |