PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25660
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 254aa    MW: 27653.8 Da    PI: 6.6385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25660genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-10138185455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OIT25660 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 185
               8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDPMMNEARA FQAAAANPPF NLAEIWPFPI NAGAAMPYAN HIPINDPMLL DHTTNHRIGS  60
ARKRREDDES AKGVSTSGNG LSESDSKRLK ATGSNDNHES GGDGEGNSGK SADQPAKSAE  120
PPKDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ALVLDEIINY  180
VQSLQRQVEF LSMKLEAVNT RVPPNIEGFP TKDLGQQAFE ANAMAFGSQG TREYAGGTSP  240
DWLHMQIGGG FERT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-88bHLH family protein