PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24449

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 1096aa MW: 121192 Da PI: 6.4371

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24449	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.1	5.8e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+++ OIT24449 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLLLG 231 99***************************9545444.38********************************************..5688889* PP EE-S CS B3 96 vfrk 99 ++r+ OIT24449 232 IRRA 235 *997 PP
2	Auxin_resp	119.5	2.6e-39	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ OIT24449 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343 79*****************************99879******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1096 aa Download sequence
MKTPGNIAGA QQAAANVNPA EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH 180 DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL 420 PGLSLVQWMN MQQNPSMQQP NYLHSLSGSV LQNVGGGADL SRQLGLPAAP QLPQHNTLQF 480 GTQRPNQQGQ MPAATLSPVG SIMQSQQQQL TDISQQPRQN LINQSVPTNQ VQAQILQAQS 540 LVQSQNVLQQ QQSLQNQLQR NLPQQQQIMN QTQQQSFMPS QPSDQLNQQM HFSDNQLQLQ 600 LLQKLHQQQQ SLLAQQSVLQ QQQSQLGPIQ DQQKQLLDVS QNFSRSLATS QMLDMSQTTS 660 TSTSLSQSQV VQQQMTSQSN FRFSQPNQQS KLHQQPGILP ELPGQVGQHL PPTTNQLSTN 720 CSSLLTGAAG GGQSVVTDDI PSCSTSPSTN NCQNAVQPNM NGRMHRGTAA GDEATQCSVP 780 LLNSSGFEAM STNSNLVKDL QHKSDVKPSV NISKSPNHGF LAPQTYLNTA GPHMDYLDSS 840 SSATSVCFSQ NDVHLQQTTN PLSFNNQPVI FRDSQDGEVQ GDPRNSVAFG SNMDNQLGLP 900 MMPDPLVTNS LMDSRKDLSN NISSGGMLSS YENPKEAQPE LSSSMVSQSF GVPDMAFNSI 960 DSTMNDDSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI DIARYSGYED LKQDLARRFG 1020 IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG 1080 NSLQNQACSS SDGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1096 aa Download sequence

MKTPGNIAGA QQAAANVNPA EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL  420
PGLSLVQWMN MQQNPSMQQP NYLHSLSGSV LQNVGGGADL SRQLGLPAAP QLPQHNTLQF  480
GTQRPNQQGQ MPAATLSPVG SIMQSQQQQL TDISQQPRQN LINQSVPTNQ VQAQILQAQS  540
LVQSQNVLQQ QQSLQNQLQR NLPQQQQIMN QTQQQSFMPS QPSDQLNQQM HFSDNQLQLQ  600
LLQKLHQQQQ SLLAQQSVLQ QQQSQLGPIQ DQQKQLLDVS QNFSRSLATS QMLDMSQTTS  660
TSTSLSQSQV VQQQMTSQSN FRFSQPNQQS KLHQQPGILP ELPGQVGQHL PPTTNQLSTN  720
CSSLLTGAAG GGQSVVTDDI PSCSTSPSTN NCQNAVQPNM NGRMHRGTAA GDEATQCSVP  780
LLNSSGFEAM STNSNLVKDL QHKSDVKPSV NISKSPNHGF LAPQTYLNTA GPHMDYLDSS  840
SSATSVCFSQ NDVHLQQTTN PLSFNNQPVI FRDSQDGEVQ GDPRNSVAFG SNMDNQLGLP  900
MMPDPLVTNS LMDSRKDLSN NISSGGMLSS YENPKEAQPE LSSSMVSQSF GVPDMAFNSI  960
DSTMNDDSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI DIARYSGYED LKQDLARRFG  1020
IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG  1080
NSLQNQACSS SDGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT24449