PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT23939

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 541aa MW: 60803.5 Da PI: 4.3975

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23939	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.9e-54	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 l+pGfrFhPtdeelv +yL++k++g++++ i ++diykvePwdLp k ++k+++ ewyfFs dkky +g r+nrat++gyWk+tgkd++v+++k+++ OIT23939 10 LAPGFRFHPTDEELVRYYLRRKITGRPIKS-APICDIDIYKVEPWDLPgKsRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVHRNKSQV 109 579**********************999.78***********6347777888*************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+++grapkg++t+Wvmheyrl OIT23939 110 VGMKKTLVYHSGRAPKGQRTNWVMHEYRL 138 *************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PICDIDIYKV EPWDLPGKSR 60 LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVHRNKSQVV GMKKTLVYHS 120 GRAPKGQRTN WVMHEYRLID EELDRAGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE 180 WEDDELQVLP KDEAAEEFVF DDDIYLDGIE LDQILGTETT LNSAPLPLDY CYGENGSSEE 240 TNNSSDAQNW LQQPDELKSI DLAVQQNVDV DPVMHEYIGE SSKNENSEDV DYLLHEPTVN 300 ATDDLQYKEE AFLEANDLSN PIEVDSSGFD MLEEYLTFFD ANDDFQNMGF DPSVLFGNDD 360 QISDQGLLAE KNIGEVTQQF IAPNEGLGEN KNDFASSSKL EPTKIGSDRQ YPFMKKASQM 420 LGNIHAPPAF ASEFPTKDAT LRLNSLSQSS SSVQVTAGFQ VRDMTAGRNG TGWPLGKHAD 480 YNIILSFGIS GGSDDSAVES FYSIHPGKTT SIISRGWFYY LFFSFLMLSM SFKIGTIICA 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PICDIDIYKV EPWDLPGKSR  60
LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVHRNKSQVV GMKKTLVYHS  120
GRAPKGQRTN WVMHEYRLID EELDRAGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE  180
WEDDELQVLP KDEAAEEFVF DDDIYLDGIE LDQILGTETT LNSAPLPLDY CYGENGSSEE  240
TNNSSDAQNW LQQPDELKSI DLAVQQNVDV DPVMHEYIGE SSKNENSEDV DYLLHEPTVN  300
ATDDLQYKEE AFLEANDLSN PIEVDSSGFD MLEEYLTFFD ANDDFQNMGF DPSVLFGNDD  360
QISDQGLLAE KNIGEVTQQF IAPNEGLGEN KNDFASSSKL EPTKIGSDRQ YPFMKKASQM  420
LGNIHAPPAF ASEFPTKDAT LRLNSLSQSS SSVQVTAGFQ VRDMTAGRNG TGWPLGKHAD  480
YNIILSFGIS GGSDDSAVES FYSIHPGKTT SIISRGWFYY LFFSFLMLSM SFKIGTIICA  540
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-130	NAC family protein

Link Out ? help Back to Top
Ensembl	OIT23939