PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22678

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 332aa MW: 36390.4 Da PI: 9.2978

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22678	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.5	8.4e-20	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G+++W++I++ ++ gR++k+c++rw + OIT22678 14 KGPWSPEEDELLQTLVEKHGPRNWSLISKSVP-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	56.4	6.7e-18	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ OIT22678 68 AFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MAAITQRKES DRIKGPWSPE EDELLQTLVE KHGPRNWSLI SKSVPGRSGK SCRLRWCNQL 60 SPQVEHRAFT PEEDETIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSMSE 120 DLSFETPQQP LKRSSSVGPS ANFSSGMNPG SPSGSDLSDS SLSGFPQPLV YKPVPRTGGI 180 FPLPPPVQQI ETAPFIPDPP TSLSLSLPGS GARETSNQTA QPTQQTQPPQ SPPLPPPPPL 240 ALPPVDKPVP TPTAAFMAQV PQTKQIYDFC SPALPKSGEK QFFTPEFLGV LQDMIRKEVR 300 NYMSGVEHNG LCMQTDAIRN AVVKRIGISK IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-71	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT22678