PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22450
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 344aa    MW: 38560.2 Da    PI: 6.9196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22450genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-1169110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T + +el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
         OIT22450  69 SFTLQQEELIIKLHATIGSR-WSIIAQQIP-GRTDNEVKNLWNT 110
                      79******************.*********.**********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MGRPPCCSDK MHNRRCNWTE EVANTSKFVS KHGIANWTAM SKKSGTGKCG RSQKHRWSNR  60
LKTDIKEDSF TLQQEELIIK LHATIGSRWS IIAQQIPGRT DNEVKNLWNT KLKKKLSAMG  120
IDPVTHKPFS QILTDYGNIG GFPKARTRFV SLNRELKGAF VSTPEQLQHP LEIFPNFNSH  180
CVTTIRLQKT ETSEDCFLSN NQPPVDLLSE LQAIRFVTEA SDNNSPKAIF SYTNPIDTDC  240
SLSSPLSSSS SSSASHSLTK NQVNRCDYLL DDAFQEDTLN IEEKLVAGAA QEYRQNNAPA  300
TKDFEATLSI KGTSPSSSSF VEDMLECENE MFLNFPGLSE DPFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-44MYB family protein