PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22295

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 571aa MW: 60668.9 Da PI: 7.6637

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22295	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT Ed+ l+ av++ G g+W+ I + Rt+ q+ rw OIT22295 205 RKPWTDTEDLELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249 789************************984222488888888888 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MFEKSKKQTC FVTEEDISTL LQRYNATTLL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT 60 NAREYQMLWR HLAYRHDLLD KLDDAAQPLD DDSDLEYELE AFPTISNEAS AEAAACVKVL 120 IASGVPNDTN MLNGSTVEAP LTINIPNGQT SRTGVDNSLH GASIYGTNIT VPVAVQKQPL 180 STVAAAEGLD THGPACTNLP PRRKRKPWTD TEDLELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWA IIRKRQGTIV GNGSQLSEAQ LATRRAMSLA LDMPISVSVG QNSGARPSNS 300 SHSVVADFAS GGAQSQHQQD PLSSKSRIVP KKPLPKPNTS PDSMVKVAAV AAGARVATPS 360 NGASLLKTVE SKSTVQIPGG GPSVKSHIPV STNGLPSNVH FIRTGLVSHS TSPSNASRPG 420 TQQVLGHSLK RVSPAFQLSP AGTSSRPNAS AAPNASICAP VAELDENTKQ KLLQKSQTTA 480 LSSAQSEKQV GVVGASGDKA LPPQVQQDKL LASSNPLIEK VEDHTLSFGD EVNEHRQEDQ 540 DSVPGIQVQE KLINDTSKPS KAPTRTENRR E

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MFEKSKKQTC FVTEEDISTL LQRYNATTLL GVLGEVAAQV AADDKIDWNA LVKKSTTGIT  60
NAREYQMLWR HLAYRHDLLD KLDDAAQPLD DDSDLEYELE AFPTISNEAS AEAAACVKVL  120
IASGVPNDTN MLNGSTVEAP LTINIPNGQT SRTGVDNSLH GASIYGTNIT VPVAVQKQPL  180
STVAAAEGLD THGPACTNLP PRRKRKPWTD TEDLELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRQGTIV GNGSQLSEAQ LATRRAMSLA LDMPISVSVG QNSGARPSNS  300
SHSVVADFAS GGAQSQHQQD PLSSKSRIVP KKPLPKPNTS PDSMVKVAAV AAGARVATPS  360
NGASLLKTVE SKSTVQIPGG GPSVKSHIPV STNGLPSNVH FIRTGLVSHS TSPSNASRPG  420
TQQVLGHSLK RVSPAFQLSP AGTSSRPNAS AAPNASICAP VAELDENTKQ KLLQKSQTTA  480
LSSAQSEKQV GVVGASGDKA LPPQVQQDKL LASSNPLIEK VEDHTLSFGD EVNEHRQEDQ  540
DSVPGIQVQE KLINDTSKPS KAPTRTENRR E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	207	PRRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	1e-73	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT22295