PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G09710.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 650aa MW: 69137.7 Da PI: 9.5913 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 200 | 244 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r+rW++eEde l avk+ G g+W+ I + Rt+ q+ rw AT1G09710.2 200 RKRWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 244 89************************9652134.478888887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.503 | 195 | 252 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-11 | 197 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-12 | 197 | 249 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-9 | 199 | 250 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-6 | 200 | 244 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.96E-14 | 201 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MVANNNTSSN RRKRIITEGD IATLLLRYDM ETILRMLQEI SYCSETKMDW NALVKKTTTG 60 ITNAREYQLL WRHLSYRHPL LPVEDDALPL DDDSDMECEL EASPAVSHEA SVEAIAHVKV 120 MAASYVLSES DILDDSTVEA PLTINIPYAL PEGSQEPSES PWSSRGMNIN FPVCLQKVTS 180 TEGMNGNGSA GISMAFRRKR KRWSAEEDEE LFAAVKRCGE GNWAHIVKGD FRGERTASQL 240 SQRWALIRKR CHTSTSVSQC GLQGTEAKLA VNHALSLALG NRPPSNKLAI GTSSRRSFPA 300 NSSIYVITED ALVWLPLACL NQKLAYLFNC GLMPTTSSCT ITETEANGGS SSQGQQQSKP 360 IVQALPRAGT SLPAAKSRVV KKTTASSTSR SDLMVTANSV AAAACMGDVL TAASGRKVEP 420 GKTDAPRVPK TKPVKHASTV CMPQPSGSLS MPKVEPGTSV AASIRSLANG KLKPVMASSS 480 SNKPPLIAPR SEGSSMLSAS APLASLSRIV SNQRVFAGSV PATEIVTCKP DGGQKGQARG 540 NEASSSAAIQ PHQITSRNLE ISQGKQATQA QSPNLLPRKV PVVRTAVHCA TNQKLMDKPS 600 DQTVVPIRGA GSQSKAKGEV NSKVGPVIKV SSVCGKPLEV ATVAGTGQGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 201 | RRKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.44971 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G09710 | |||||
AtGenExpress | AT1G09710 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G09710.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G09710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF462804 | 0.0 | AF462804.1 Arabidopsis thaliana At1g09710/F21M12_10 mRNA, complete cds. | |||
GenBank | AY133647 | 0.0 | AY133647.1 Arabidopsis thaliana At1g09710/F21M12_10 mRNA, complete cds. | |||
GenBank | AY519546 | 0.0 | AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F21M12 | 0.0 | AC000132.1 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001184950.1 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | F4I129 | 0.0 | F4I129_ARATH; Homeodomain-like superfamily protein | ||||
STRING | AT1G09710.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4823 | 27 | 51 | Representative plant | OGRP5923 | 15 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT1G09710.2 |
Entrez Gene | 837499 |
iHOP | AT1G09710 |
wikigenes | AT1G09710 |
Publications ? help Back to Top | |||
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