PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22277
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 386aa    MW: 43319.8 Da    PI: 7.1048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22277genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-06144164526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C+ f++ G C+ Gd C FaHg
  OIT22277 144 ACPEFRK-GNCRKGDGCEFAHG 164
               7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MMIGERNHPY PTVHIPPWSY GDNQTDNMHL TLSPSGNANS SPSFSAASGE DYSMFPQNDN  60
GLKALQRYLP FNDVVSDFDF EYGEGRDVDL PVDAYSCDQF RMYEFKVRKC ARGKSHDWTE  120
CPYAHPGEKA RRRDPRKYNY SGTACPEFRK GNCRKGDGCE FAHGVFECWL HPARYRTQPC  180
KDGLNCKRRV CFFAHSPEQI RVLSPRADSY VGSPSISRYG FEGKNLPFIT SPESGSPPCE  240
SPPMSPMTQT TNSVSLLSRS LGSNYSINEM VASLRQLQLN KVKSMPSSWN LQMGSPVLGS  300
PRIPVNRPGF CSLPSTPTRA FNRPGVCCFD LCEEELVMER VESGRDLRAK MFEKLSKENP  360
LDGMVSDPVL SEAPNPDVGW ISELIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-115C3H family protein