PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22204
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 440aa    MW: 48475.8 Da    PI: 7.6012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22204genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08119139526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C+++ + G C yG++C+F H+
  OIT22204 119 VCNYWVK-GNCTYGNTCRFLHS 139
               7******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MDMDGSKRIF QRLGPHSQGG DNNSNKQQKV CFHWRAGRCN RFPCPFLHRE LPAPPHQQQQ  60
QLHNGMPSSS SKRPHAFSSD YDNRGSAGGG GMRRNPNFNN TWGRTAAGGG AVVRKMEKVC  120
NYWVKGNCTY GNTCRFLHSW TTGDCFTLLT QLEGHQKVVT GIALPSGSDK LYSGSTDKTV  180
RVWDCQSGQC AGVVNFDGEV GCMLSEGPWI FVGLTNVVKA WNTQTGTDLS LDGPVGQVYA  240
LVVGNDMLLA GTEDGILAWK YNGSTNCFEP AAQLKEHTHH VVSLVVGANR LYSGSMDNSI  300
RVWNLETMQC LQILTGHTSV VMSVLCWDQF LLSCSLDQTI KVWAANESGN LEVTYTHQEE  360
KGVLALCGMH DSEAKPVLLC SCNDKMIRVY DLPSFSERGK IFSKEVVRRI EIGPGGLFFT  420
GDESGQLRVW KWLTESSSTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein