PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21689

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 466aa MW: 50881.8 Da PI: 8.4752

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21689	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.8e-16	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW+ eE+ ++++a k++G W++I +++g ++t+ q++s+ qk+ OIT21689 44 RERWSDEEHRKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MTVQDQSNSD TILPSGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFLEALK 60 LHGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNNGD VSSVKPIEIP PPRPKRKPMH 120 PYPRKLAIPV KSGTLAPEKS KRSASPNLCL SETENQSPTS VLSALGSDAF GTVDSSKPSE 180 SPSPVSSAVS ENCGDLVLSE QSDFNLEKRR SSPAQAYASS TLDNQACVKL ELFPEDNDFV 240 KEASVEASST HSLKLFGKTV FVTNSCVLSS PTSGQILLAD VNDEPASRTL SQSSFPMKIS 300 PSDSECAPST VTMYHAPANG SPRPNKSVSC HLLSWGSSYV SAAFSCTQVH SPIPMKGRAL 360 FDHRDSEDQE TQKEGSSTGS NTESVSAELS VDKSLGVEAQ ISRNQEAGRE LFSVRASVPS 420 LFERRANSTK RVKGFVPYKR CLAERGNSSS TLTGEEREEK RTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MTVQDQSNSD TILPSGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFLEALK  60
LHGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNNGD VSSVKPIEIP PPRPKRKPMH  120
PYPRKLAIPV KSGTLAPEKS KRSASPNLCL SETENQSPTS VLSALGSDAF GTVDSSKPSE  180
SPSPVSSAVS ENCGDLVLSE QSDFNLEKRR SSPAQAYASS TLDNQACVKL ELFPEDNDFV  240
KEASVEASST HSLKLFGKTV FVTNSCVLSS PTSGQILLAD VNDEPASRTL SQSSFPMKIS  300
PSDSECAPST VTMYHAPANG SPRPNKSVSC HLLSWGSSYV SAAFSCTQVH SPIPMKGRAL  360
FDHRDSEDQE TQKEGSSTGS NTESVSAELS VDKSLGVEAQ ISRNQEAGRE LFSVRASVPS  420
LFERRANSTK RVKGFVPYKR CLAERGNSSS TLTGEEREEK RTRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-55	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT21689