PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21527
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 695aa    MW: 77304.1 Da    PI: 8.4553
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21527genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
         OIT21527 586 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 635
                      6789999*******************97666689*9***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    
MVSKKRLNCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYELADCRDS IKHEQVEDDK AVRSECLDQG SCIESAYKPE AAEQEQTFKN  120
GLSRPFAENK SFLEHTSTII GSNSLLKDWS DVKLESCKEV SADAQLQTQV EGGSPDLADP  180
FDIRIVEGTR KQLDDDSKQT ELTVANSCSI KAPIEKNVNN SVLVNSDSSV QLPLYRDPVP  240
CASFVKSRNN VKLGIRDDDE NYFGCYRHST KIRTFRPTSR ITYRRIRKML TSRHWKVAPK  300
LKDCELSYSN DGVKSFYCNR KSKRGNERCR FEIPSKRRKL YDHGFAVAYD QEASSKSISN  360
SHEKGIKGDT AIPPKGAGAS ASVRNHQKDP NVKFSIKSFK VPELYIEVPE TETIGSLKRT  420
VMEAVTAILG SGLRVGVVLQ GKKVRDDNRT LQQAGISPND NLDTLGFTLE PSFSKVPLSL  480
SPKDDTLASA SYITDQELSR HPSSPIFELG PPNALSDPPE AKLDKHDESN HELEMSPTTP  540
IYQSADEAFP DFKALAIVPP VNTEALAVVP VNHKNRRSEL SQRRTRRPFS VAEVEALVEA  600
VEQLGTGRWR DVKMRAFDNA DHRTYVDLKD KWKTLVHTAS IAPQQRRGEP VPQELLDRVL  660
AAHSYWSQHQ AKQHAKQHAE PLKIVDAQVQ NAVAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.15e-95MYB_related family protein