PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21182

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 372aa MW: 41606.3 Da PI: 5.0494

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21182	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.9	4.9e-29	145	206	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt + gC ++k+v+r++edp+++e+tY+g+H+++ OIT21182 145 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRhvqGCLATKQVQRADEDPTIFEVTYRGRHTCN 206 59************************988889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MENYGADNNG ELNRIISELT QGRDLVHQLQ LQLNAPYSSS SSSPETTRDF LLHNIQSKFD 60 KALSLLQYST EDTCNSLLPL SNSVPIYNFG RSESPPSFTA SPPHSEDSDR DLEPKDPTTR 120 KRKSSTPRWT KRVQLCPGAP IEGTLDDGFS WRKYGQKDIL GAKYPRGYYR CTLRHVQGCL 180 ATKQVQRADE DPTIFEVTYR GRHTCNQGGG NANNNVMNPA PLTIIPQNQE QNLGAGSRNE 240 HQQIVSVPQQ NPQEILLNFQ RNLNISNDNN FNFNTDPNNV PFSTFASSSD IKSDQDYSFV 300 PNSIIQSDNF VENFSQSYMS AGTSGSSSNY FGMSSNSEMN NFGGKQNGSN DYQFNSMGYE 360 SNFPFDYQGF SS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MENYGADNNG ELNRIISELT QGRDLVHQLQ LQLNAPYSSS SSSPETTRDF LLHNIQSKFD  60
KALSLLQYST EDTCNSLLPL SNSVPIYNFG RSESPPSFTA SPPHSEDSDR DLEPKDPTTR  120
KRKSSTPRWT KRVQLCPGAP IEGTLDDGFS WRKYGQKDIL GAKYPRGYYR CTLRHVQGCL  180
ATKQVQRADE DPTIFEVTYR GRHTCNQGGG NANNNVMNPA PLTIIPQNQE QNLGAGSRNE  240
HQQIVSVPQQ NPQEILLNFQ RNLNISNDNN FNFNTDPNNV PFSTFASSSD IKSDQDYSFV  300
PNSIIQSDNF VENFSQSYMS AGTSGSSSNY FGMSSNSEMN NFGGKQNGSN DYQFNSMGYE  360
SNFPFDYQGF SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	124	TRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	7e-46	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT21182