PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19435

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 361aa MW: 39814.6 Da PI: 6.963

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19435	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	102	151	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d k+++lg f+ta Aa+a+++a+ k++g OIT19435 102 SQYRGVTFYRRTGRWESHIWDG-----GKQVYLGGFDTAHTAARAYDRAAIKFRG 151 78*****************3.....5**********************998 PP
2	AP2	37.5	5.9e-12	194	241	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkk 52 s+y+GV+ +k g+W+A+ g +k+++lg f+ + eAa+a+++a+ k OIT19435 194 SKYRGVTLHK-CGQWEAR---M---GqllGKKYIYLGLFDCEIEAARAYDKAAIK 241 89******.7**...5...334336******99*******976 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MFDLNLSSED VPVESGTSNS SIVNMETSNS TAGDDEYEEN GNGDFVLKEL FPLVSGEAEL 60 SQQQSLNLSA NYRASNEQRI VISPQRRSQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 120 WDGGKQVYLG GFDTAHTAAR AYDRAAIKFR GLDADINFNI SDYGDDLKQM NNFSNEEFVH 180 ILRCQSNGFS RGSSKYRGVT LHKCGQWEAR MGQLLGKKYI YLGLFDCEIE AARAYDKAAI 240 KSSGKEAVTN FELSTYEGVL TSEAHIRGTT RNLDLNLGIS PSSYADNQHG NTSQIGNFQG 300 QHGSNGLPEH RRQDQNTNGG SPTVPLFSTA ASSGFENSAI TAPSAAIHQL HFGSGALPYH 360 H

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MFDLNLSSED VPVESGTSNS SIVNMETSNS TAGDDEYEEN GNGDFVLKEL FPLVSGEAEL  60
SQQQSLNLSA NYRASNEQRI VISPQRRSQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  120
WDGGKQVYLG GFDTAHTAAR AYDRAAIKFR GLDADINFNI SDYGDDLKQM NNFSNEEFVH  180
ILRCQSNGFS RGSSKYRGVT LHKCGQWEAR MGQLLGKKYI YLGLFDCEIE AARAYDKAAI  240
KSSGKEAVTN FELSTYEGVL TSEAHIRGTT RNLDLNLGIS PSSYADNQHG NTSQIGNFQG  300
QHGSNGLPEH RRQDQNTNGG SPTVPLFSTA ASSGFENSAI TAPSAAIHQL HFGSGALPYH  360
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-89	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT19435