PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19400
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 514aa    MW: 57364.3 Da    PI: 4.4877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19400genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.66.5e-1051445071374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv+ Ll+c eav+ ++++la+al+  ++e+a ++  pm+++a+yf++AL +r+++   +l ++++ s  +     ++l+    ++e+ P+l+f++ taN+a
  OIT19400 144 LVKILLACGEAVQRNNQTLADALVRLMREHAVSQFGPMKKVATYFAKALDQRIQG--MNLEDIMEFSCYT-----DNLMQ-MRLHEIRPYLEFAYSTANRA 236
               6789***************************************************..4555555555544.....33333.3489**************** PP

      GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..g 199
               Ilea+ ++ +rvHiiDf+++qG QW+aL+q++a Rp+gpp +R+Tg+gsp+  ++++l++++++L++fA+ +gv+fef+ +++++l+d+++++L+++p   
  OIT19400 237 ILEAFPNSsTRVHIIDFSLNQGPQWLALMQEFALRPGGPPAIRLTGIGSPD--NTNALRQLKWKLTEFADIFGVEFEFRGIMVDSLADVDTSRLDIRPsnY 335
               *****99989***************************************76..99*******************************************999 PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnv 297
               E +aVn++++lh+ll  ++++e+    vL+ +k++ Pk+v+++e+ea++  + F++rf +a +yys++fdsle++ ++++   + ++ + +e+lg++i n+
  OIT19400 336 EEVAVNSIFELHHLLYTPGEIEK----VLNSIKEMHPKIVTIIEEEANR--SVFMDRFNDAWSYYSKMFDSLENSESTHDqhnSGDSRLVHEYLGQQINNM 430
               ***************99999999....*******************987..9********************776433333344555666667******** PP

      GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               vace    +  ++tl++Wr ++++aGF+pv+l+ +++ qa ++l  ++   gyrve+++g+l+l W++rpL+s+S+W+
  OIT19400 431 VACELGT-ELVETTLSEWRVKMNSAGFNPVQLGPSMYVQATMILDLFQnRYGYRVEQNNGCLTLSWHGRPLISTSVWQ 507
               ****887.5667789*********************************999**************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    
MSSGNLSTDT FMEDGESFVS NTDAIINGTS DISGLTLSLI SDPNIPNSSD SSTSIDDHLQ  60
QISTAAGGCD NMIVSSGATN SRIFNSSTDF RAFSRNISAV WNNYSDKVAE EGSAESSNRM  120
RSEDGLELCL GLSIGTEAVN EEPLVKILLA CGEAVQRNNQ TLADALVRLM REHAVSQFGP  180
MKKVATYFAK ALDQRIQGMN LEDIMEFSCY TDNLMQMRLH EIRPYLEFAY STANRAILEA  240
FPNSSTRVHI IDFSLNQGPQ WLALMQEFAL RPGGPPAIRL TGIGSPDNTN ALRQLKWKLT  300
EFADIFGVEF EFRGIMVDSL ADVDTSRLDI RPSNYEEVAV NSIFELHHLL YTPGEIEKVL  360
NSIKEMHPKI VTIIEEEANR SVFMDRFNDA WSYYSKMFDS LENSESTHDQ HNSGDSRLVH  420
EYLGQQINNM VACELGTELV ETTLSEWRVK MNSAGFNPVQ LGPSMYVQAT MILDLFQNRY  480
GYRVEQNNGC LTLSWHGRPL ISTSVWQLKP PSLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-123GRAS family protein