PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08632

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 562aa MW: 63596.1 Da PI: 9.6011

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08632	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.6	3.5e-19	114	163	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y+GVr++k +g+W+AeIrd +++r +lg+f+taeeAa a+++a+ +++ OIT08632 114 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 163 59*****9.******55....35********************9987 PP
2	AP2	59.6	7.4e-19	481	531	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd + kr+r +lg+++ta+eAa a+++a+ +++g+ OIT08632 481 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTYDTAYEAALAYDKAAIEIRGA 531 8*****9.******42...36***********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MTVSRELIQT MASQQEHQKK EAVEKPPEID VVEKSNNQVG ESSGALPHLV RIHVTDRDAT 60 DSSSDEEKAG GEKSEQHGKT CVKEIIIENG KTEVIPKKKS KEKKDITVLQ GDVKKYRGVR 120 QRKWGKWAAE IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRAMASQEE HQKNEAVEKP 180 SEIDVVEKPS EVDVVEKPSK IDLVEKSINQ VGESSVVLPR VVRIHLPDSS SDDEEKVEGE 240 KSKRHERTCV KEIIIENGKT TVISKKMSRE KKDIKLLQEN AKKRIHVPES DATDSSSDNE 300 EKVEGEKSKR HARMCLNETI IENGKTQVIS KKKSNEKKDV KLLQENAKKR ICVPDCDATD 360 SSSGDEENVE GEKSKRHELT GAKEIVIENG KTEVISKKKS KEKKHKKLLQ ENVKKRIHVL 420 DHDTTDSSSD DEVKAEGKKS QQQEKTCAKE ITFENGKTEV ISKKKSKEKK DIMLLQGNVN 480 KYRGVRQRKW GKWAAEIRDT RKRTRTWLGT YDTAYEAALA YDKAAIEIRG ANALTNIIKP 540 PPRKEINIIF KIPSLPADDA RV

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MTVSRELIQT MASQQEHQKK EAVEKPPEID VVEKSNNQVG ESSGALPHLV RIHVTDRDAT  60
DSSSDEEKAG GEKSEQHGKT CVKEIIIENG KTEVIPKKKS KEKKDITVLQ GDVKKYRGVR  120
QRKWGKWAAE IRDARRKTRL WLGTFDTAEE AALAYDKAAI EIRAMASQEE HQKNEAVEKP  180
SEIDVVEKPS EVDVVEKPSK IDLVEKSINQ VGESSVVLPR VVRIHLPDSS SDDEEKVEGE  240
KSKRHERTCV KEIIIENGKT TVISKKMSRE KKDIKLLQEN AKKRIHVPES DATDSSSDNE  300
EKVEGEKSKR HARMCLNETI IENGKTQVIS KKKSNEKKDV KLLQENAKKR ICVPDCDATD  360
SSSGDEENVE GEKSKRHELT GAKEIVIENG KTEVISKKKS KEKKHKKLLQ ENVKKRIHVL  420
DHDTTDSSSD DEVKAEGKKS QQQEKTCAKE ITFENGKTEV ISKKKSKEKK DIMLLQGNVN  480
KYRGVRQRKW GKWAAEIRDT RKRTRTWLGT YDTAYEAALA YDKAAIEIRG ANALTNIIKP  540
PPRKEINIIF KIPSLPADDA RV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-19	ERF family protein

Link Out ? help Back to Top
Ensembl	OIT08632