PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08563
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 377aa    MW: 43250.2 Da    PI: 4.9193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08563genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-0689112226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               k  lC ff + G+C  G +CkF+H+
  OIT08563  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
               6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MPPKQSKADL AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQNAVPKPDP KKLDAKKKKE  60
EEKAKERELN ELFKVAISQP KVPLGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDVFSDKRD EDGKETMEDW DQETLEKVVA SKSQEYNKNK PTDIVCKYFL EAVEKKQYGW  180
FWVCPNGSKE CHYRHALPPG YILKSQMKAL LQEEADKMPI EEEIDEQRAK LTASTPLTTE  240
LFMEWKKKKM EEREASLAKQ RADRAKNDRM SGRELFMSDA SWFVDDVGAY DKYEREEESS  300
EPPKENKESA RDEASSSMSA RDIHDGGEAS HNNEVNDNYD DDDDDDDDDD LDVDELNELE  360
ASLSKTSLQI NEPGSHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-144C3H family protein