PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07403

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 378aa MW: 41943.8 Da PI: 10.4318

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07403	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.4	5.2e-15	72	159	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k ++ + s++p+f++l+ OIT07403 72 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIASG--QGPSKWPFFEKLD 159 7***********************************856666666644449****************98..56668****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEHDEETQSH QSGGSGSRSP ESPRSNGRIT VTVASAPPPQ NTLTLALPIQ QPQPLRTSGG 60 SGGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVADIVS SREDYRKTPK 120 TDIQCKNRID TVKKKYKLEK SKIASGQGPS KWPFFEKLDQ LIGPTAKINP TIATGGAGPS 180 NLYSGNQKFQ VPMGIPMGVR SLPHLRPHQQ LQSQQKQKQP FRKRPHVDSD TSESESEPEL 240 SPDSTDSFPP GTFQRKRPRI QRELMNSSGM RQGTRGGSGE ASGKGKNWGN SVRELTRAIL 300 KFGEAYEQAE SAKIQQMVEM EKQRMKFAKE LELQRMQFFM NTQLELSQLK NHRRVGNSNH 360 RSNNHTTTAN NHNSSDSS

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEHDEETQSH QSGGSGSRSP ESPRSNGRIT VTVASAPPPQ NTLTLALPIQ QPQPLRTSGG  60
SGGGGGGGRE DCWSEGATGV LIDAWGERYL ELSRGNLKQK HWKDVADIVS SREDYRKTPK  120
TDIQCKNRID TVKKKYKLEK SKIASGQGPS KWPFFEKLDQ LIGPTAKINP TIATGGAGPS  180
NLYSGNQKFQ VPMGIPMGVR SLPHLRPHQQ LQSQQKQKQP FRKRPHVDSD TSESESEPEL  240
SPDSTDSFPP GTFQRKRPRI QRELMNSSGM RQGTRGGSGE ASGKGKNWGN SVRELTRAIL  300
KFGEAYEQAE SAKIQQMVEM EKQRMKFAKE LELQRMQFFM NTQLELSQLK NHRRVGNSNH  360
RSNNHTTTAN NHNSSDSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-63	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT07403