PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06976
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 584aa    MW: 66136.1 Da    PI: 5.302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06976genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.91.9e-932145821374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100
               lv+lLl++Ae v++++++la++ +ar    as +g+p+qRl +yf eAL++r+ r++ +  +   + +  s+    ++  al+  +   P+ ++ +++  q
  OIT06976 214 LVHLLLAAAEEVDQQQFHLASQSVARCLCKASATGNPIQRLCFYFGEALQERIDRETGRSPSFErKLRFLSTLALGTTPEALT-CHTEIPFSQVMQFAGVQ 313
               68*****************************************************3222222210222222222333333333.55567************ PP

      GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               aI e v+g++++H +Df+i  G+Q   L+qaLa +R+++   l+iT++g+   ++ke++eetg+rL++fA++l++pf+fn++ +++++dl++e+ +vk +E
  OIT06976 314 AIIENVKGATKIHLVDFNIRTGIQCTGLMQALAeQRDRPIELLKITAIGH---QEKEKIEETGKRLQSFANSLNLPFSFNIVFMSDMKDLRVESVNVKADE 411
               *********************************66668888*********...579********************************************* PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               ++aV + + l ++ +++       d++++++++l+P vvvv+e ea+hns+sFl+rf+eal +ys+lfd++e  + r++  r+ +E + +g+ i+n+va+e
  OIT06976 412 TVAVYCNIVLRTMISRPEY----MDNTMRVIRGLRPSVVVVCEVEANHNSPSFLNRFVEALFFYSVLFDCFEDCMDRDNLVRKRIEVFHIGEGIRNMVAAE 508
               *************955555....555*************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               gaer+ r+ +l  Wr+ + ++G+ +++lse+   qa+l+l++++ +   +v+++ ++l+ gWk+ p+ svS W+
  OIT06976 509 GAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLILKQFSqGSSCNVQNDGKALLVGWKGTPIESVSIWK 582
               ********************************************88889************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MDQVSIPAID FSVLQGGHNH LQESGRNELV DNGVVDPWFG LDSEDLFSLY SVFDLKYQEN  60
TSDKHVQLSE DQQQNISDYC TQSDDSSSNM DFPLQPVQIQ STFEASNRIQ PQEPRLGNFH  120
GEKTNPISSA SLELLNNCGR LFKKSSKKNL SNVHINEARV GNIPRLSTEE ILRVAGERYI  180
QYSTQMVDGL SMFIHPYASA LSGLSMEQTR DMELVHLLLA AAEEVDQQQF HLASQSVARC  240
LCKASATGNP IQRLCFYFGE ALQERIDRET GRSPSFERKL RFLSTLALGT TPEALTCHTE  300
IPFSQVMQFA GVQAIIENVK GATKIHLVDF NIRTGIQCTG LMQALAEQRD RPIELLKITA  360
IGHQEKEKIE ETGKRLQSFA NSLNLPFSFN IVFMSDMKDL RVESVNVKAD ETVAVYCNIV  420
LRTMISRPEY MDNTMRVIRG LRPSVVVVCE VEANHNSPSF LNRFVEALFF YSVLFDCFED  480
CMDRDNLVRK RIEVFHIGEG IRNMVAAEGA ERFTRNMKLD VWRAYFARFG MVEMELSESS  540
WYQANLILKQ FSQGSSCNVQ NDGKALLVGW KGTPIESVSI WKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-50GRAS family protein