PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06729
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 658aa    MW: 72909.9 Da    PI: 9.3653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06729genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07559608147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
         OIT06729 559 RRPFSVYEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 608
                      567888899*****************9776668**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNE MCAFDLLTTV AGKLLLEGES  60
TPNSTNTVKE EEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DTLSGQASVI  120
TSSDCSEKLD SAERFINCES KNETGNCSTK VEQEASGFGD FSNCTLGAES KKQMKIDLSN  180
DAKIFSSQFP DLWDRKPTNL VASDNTVKLS LSTDPVPFGS FPVIRNDVKL TNKDDDENSC  240
GCAQPSTRNK AFRPTPRVGN FRTRKLIDLN PKFEDADSET RHVYNRKNDY KSERSQRDFP  300
FKKRKLYYCN SFSDSDGGSS DRICSSPTKD INRDAAGYSL ASSGARAAVG TSISRGARTS  360
SDSHVKLKIK SFRVPELFVE IPENATVGSL KRTVMEAVTA ILGGGLHIGV VFQGKKVRDD  420
NKTLLQAGIS HDDKLDALGF TLEPNPSRAS STSGPESRSR VLPCDTLQPL TRGPPTPTVI  480
CNGIRRGTYS AFSDHPEPNL NNFIESDHDS APSPPDASLE KDAADSRALV PVAAVNAEAL  540
AVVPMRKHKR SETAQRRIRR PFSVYEVEAL VQAVEKLGTG RWRDVKMRAF DNAKHRTYVD  600
LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLIAHGYWS QKQAKQHMKH QSETRLLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296305QRDFPFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-137MYB_related family protein