PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06616

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 623aa MW: 69761.7 Da PI: 6.2533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06616	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.3e-13	437	480	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + E+rRR++iN++f L ++lP+ +K++K++ L +++eY+k+L+ OIT06616 437 ISEKRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 480 78*******************8.....8**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MAMGHQDQDG VPNNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLEWSDGY YNGDIKTRKT 60 VQAGEVNEDQ LGLHRTEQLR ELYSSLLTGE SEEDLQPQAK RPSAALSPED LTDTEWYFLV 120 CMSFIFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQTV VCFPSLGGVI 180 ELGVTELVLE DPNLIQQIKN SFEVDHSVIP KRPDYVSNDA KDDMNVVSRK LDRNVLESDA 240 YPVEINNSSP HDSSNGFVAN QEAEDSLLVV GVIGETSQAQ SWKFVDDNMS NSVHNSLNSS 300 DCISQNYEKL SPLSSGEKET KPCPIDRQEH NQNKLHLLDH QGDDTQYQAV ISTLLKSSDQ 360 LTLGPHFRNI NKKSSFAGWK NDAQTPRIGT AQKLLKKVLL EVPRMHGGVT HKFSRHNRKK 420 NCLWRPEVDD IDRSRVISEK RRREKINERF MHLASMLPTG GKVDKISLLD ETIEYMKELE 480 RRVQELEARS GKKTNDTAEQ TSDNCGTSKF NDVKGSSLKR KACDLDETEP ESCNKLLKGS 540 SADSIVINMI DKEVSIKMRC LWSEGLLLKI MEALTDLQMD CHTVQSSKID GILSIAIESK 600 SNGLKTVSVG AIREVLQRVV WKS

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MAMGHQDQDG VPNNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLEWSDGY YNGDIKTRKT  60
VQAGEVNEDQ LGLHRTEQLR ELYSSLLTGE SEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFIFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQTV VCFPSLGGVI  180
ELGVTELVLE DPNLIQQIKN SFEVDHSVIP KRPDYVSNDA KDDMNVVSRK LDRNVLESDA  240
YPVEINNSSP HDSSNGFVAN QEAEDSLLVV GVIGETSQAQ SWKFVDDNMS NSVHNSLNSS  300
DCISQNYEKL SPLSSGEKET KPCPIDRQEH NQNKLHLLDH QGDDTQYQAV ISTLLKSSDQ  360
LTLGPHFRNI NKKSSFAGWK NDAQTPRIGT AQKLLKKVLL EVPRMHGGVT HKFSRHNRKK  420
NCLWRPEVDD IDRSRVISEK RRREKINERF MHLASMLPTG GKVDKISLLD ETIEYMKELE  480
RRVQELEARS GKKTNDTAEQ TSDNCGTSKF NDVKGSSLKR KACDLDETEP ESCNKLLKGS  540
SADSIVINMI DKEVSIKMRC LWSEGLLLKI MEALTDLQMD CHTVQSSKID GILSIAIESK  600
SNGLKTVSVG AIREVLQRVV WKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT06616