PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06412
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 829aa    MW: 92063.5 Da    PI: 4.9287
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06412genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2099154156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  OIT06412  99 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 154
               688899***********************************************998 PP
2START158.16.7e-502965221206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
               ela++ ++elvk+ +a++p+W +      e++n +e+ + f+   v         ++ea r s+vv+m++ +lv  lld + +W e ++    +a+t++v+
  OIT06412 296 ELALSSMDELVKMCQAADPLWIRTTdsgkEILNVEEYSRMFPWP-VgikqnsneLRIEATRSSAVVIMNSITLVDALLDAN-KWIELFPsiisRAKTIQVV 394
               578999*****************998888889999998888653.257888999***************************.******************* PP

               CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
     START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
               +sg      g lqlm++e+qal+plvp R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i++++ng+s+vtwve+++++++ + 
  OIT06412 395 TSGvsghatGSLQLMFMEMQALTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSLHNNF-PAPFPYFKRRPSGCIIQDMPNGYSRVTWVEQAEVEENPVN 494
               ***************************************99**************99998.58888888******************************** PP

               HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
     START 179 wllrslvksglaegaktwvatlqrqcek 206
               +++++ v+sg+a+ga++w+  lqrqce+
  OIT06412 495 QIFNQYVSSGMAFGAQRWLGILQRQCER 522
               **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MFGDCQLFSS MGMGGNAVSS DSLYSSPIQN PNFNFMAMGG NNLPFNIFPP NIIPKEENGL  60
FKSKEEMDSG SGSEHIEGMS GNELETEQQQ QQQQQPGKKK RYHRHTARQI QEMEALFKEC  120
PHPDDKQRLK LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNVILRAEND NLKNENYRLQ  180
AALRSIMCPS CGGPAMLGEM GYDEQQLRLE NARLKEEFER VCCLVSQYNG RGPMQGTPLL  240
PPSLELDMSI NFSRKFEEPM ANCSTEMVPV PFMPENNSQF SGGPIILEEE KSIAMELALS  300
SMDELVKMCQ AADPLWIRTT DSGKEILNVE EYSRMFPWPV GIKQNSNELR IEATRSSAVV  360
IMNSITLVDA LLDANKWIEL FPSIISRAKT IQVVTSGVSG HATGSLQLMF MEMQALTPLV  420
PTRECYFLRY CQQNVEEGTW AIVDFPLDSL HNNFPAPFPY FKRRPSGCII QDMPNGYSRV  480
TWVEQAEVEE NPVNQIFNQY VSSGMAFGAQ RWLGILQRQC ERLASLMARN ISDLGVIPSP  540
EARKSLMNLA QRMIKTFCMN ISTSCGQSWT ALSDSLEDTV RITTRKVTEP GQPNGLILCA  600
VSTTWIPYNH FQVFDLLRDE RRRAQLDVLS NGNSLHEVAH IANGSHPGNC ISLLRINVAS  660
NSSQSVELLL QESCTDDSGS LVVYTTVDVD AIQLAMNGEA PSCIPLLPLG FVVTPVGQIN  720
NCDTNINPSE ANSGAQSSEK RNLSIQESGS GGCLLTVGLQ VLASTIPTAK LNLSSVTAIN  780
HHLCNTVQQI TAALSAFNPE PAITVPSPQL QPQQQQLEPK QADEISSNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein