PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06191

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 668aa MW: 74127.5 Da PI: 8.8502

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06191	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH+r+H OIT06191 76 KCEKCSREFYAPINYRRHMRLH 97 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ 60 DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK 120 LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMAIWA HPQDYYKAGL ALLEVIQGKP 180 SKLPITSQEL FSILDDASET TFLCAGTAES VQKYVFDGYA AKKGLELKNM VACASFLFEQ 240 KLVKAWFADK DAEAMRCQKL LFEEEEAAQK RQAELLERKK LKKLKQKEQR AREQSNWERG 300 DLEVPADSFE GPIAESSVRS AAASESSSST PEVSADISSC LELDVEPPPV SANSRRHFPH 360 TQWQVAKSQR TGRNGFRNSQ NHEVQNLEPV QKHGVIKDRG APVNGSKIWT RKIRVQNGER 420 LRLDPQKEAV DQNQSNCEVM IGSISVPMKN CSTHGQGNCP AVERDNFEST EPAMLQKLNH 480 VQKPAKHDVL QGGSNGAAVK LWRPVSRHGS GGQDPGEDVI SVKLDNRTSS TENNLRLCSR 540 DNPTGKSKNY TCQVSDGNVL QGLGFCSVSA KAFLSQRWKE AISGDHVRLV LSDDTEVSGQ 600 SDTQNGSSEA ALPSADQDHG ILVKADNQQA NTADLSFSSN GNSKVKFRQK PDKSTKIKYI 660 PKQKKKKP

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MSVGKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGPVQW FQLLHGLEQQ  60
DNAGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMAIWA HPQDYYKAGL ALLEVIQGKP  180
SKLPITSQEL FSILDDASET TFLCAGTAES VQKYVFDGYA AKKGLELKNM VACASFLFEQ  240
KLVKAWFADK DAEAMRCQKL LFEEEEAAQK RQAELLERKK LKKLKQKEQR AREQSNWERG  300
DLEVPADSFE GPIAESSVRS AAASESSSST PEVSADISSC LELDVEPPPV SANSRRHFPH  360
TQWQVAKSQR TGRNGFRNSQ NHEVQNLEPV QKHGVIKDRG APVNGSKIWT RKIRVQNGER  420
LRLDPQKEAV DQNQSNCEVM IGSISVPMKN CSTHGQGNCP AVERDNFEST EPAMLQKLNH  480
VQKPAKHDVL QGGSNGAAVK LWRPVSRHGS GGQDPGEDVI SVKLDNRTSS TENNLRLCSR  540
DNPTGKSKNY TCQVSDGNVL QGLGFCSVSA KAFLSQRWKE AISGDHVRLV LSDDTEVSGQ  600
SDTQNGSSEA ALPSADQDHG ILVKADNQQA NTADLSFSSN GNSKVKFRQK PDKSTKIKYI  660
PKQKKKKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	284	ERKKLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-112	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT06191