PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06010

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 739aa MW: 80290.4 Da PI: 7.7017

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06010	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.6e-24	156	257	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++ ++el++ OIT06010 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RTADGELRL 252 99**************************9743..345679********************************************..4589999 PP EEE-S CS B3 95 kvfrk 99 +v+r+ OIT06010 253 GVRRA 257 99986 PP
2	Auxin_resp	111.5	8.2e-37	282	363	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+++YnPr ++s Fv +++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L OIT06010 282 VVNAISSTNAFSICYNPRGGSSGFVLPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 363 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MMCGLIDLNT VDNDDVGEET TAPVSPASSS TASGCSDLTS SSLPAVASVC LELWHACAGP 60 LISLPKKGSA VVYLPQGHLE HLSEYPPIAY NLPPHVFCRV VDVKLQADAA SDEVYAQVSL 120 VPDNQIEQKW RDGDIDADTE EEEIEGAGKS TTPHMFCKTL TASDTSTHGG FSVPRRAAED 180 CFPPLDYRQQ RPSQELVAKD LHGIEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV 240 LFLRTADGEL RLGVRRAAQA KTCSNYLAAY SQLLNVSGIV DVVNAISSTN AFSICYNPRG 300 GSSGFVLPYH KFSKTLAHPF SAGMRFKMRV ETEDAAEQRF TGLVVGVSDV DPVRWPGSKW 360 RCLLVRWDDL DVSRHNRVSP WEIEPSGSAP VSSSLVMPSA KRTRVGFPIT KADFPIPRDG 420 IAVSDFGESS RFQKVLQGQE ILGINSPYGG FDAHSPRTGG IRCFPGFPSS GTSRMGNSIR 480 TLLGDSDKSP ESIGFSDPSR FNKVLQGQET FSTPPYGRGH AGSLMQEKSR TGIIVGIQVP 540 SHVNRWSAPN QGNRSHCNPS TLVPASSPPS VLSFQHPRSP ASKFQAMFNH KHGKLETATQ 600 ALDMSESCSR HLASGSHAED ISRKGDTQGI SSFSILKEQK QTGISYLSLG TQSSQNLVSM 660 CKTSCRIFGF PLTENKLNAT RAENPAEAVY SRGLETTFLP STDGKLQPGP PLMTNVVGTN 720 FTRVNDLYAA RDVLLDIAL

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MMCGLIDLNT VDNDDVGEET TAPVSPASSS TASGCSDLTS SSLPAVASVC LELWHACAGP  60
LISLPKKGSA VVYLPQGHLE HLSEYPPIAY NLPPHVFCRV VDVKLQADAA SDEVYAQVSL  120
VPDNQIEQKW RDGDIDADTE EEEIEGAGKS TTPHMFCKTL TASDTSTHGG FSVPRRAAED  180
CFPPLDYRQQ RPSQELVAKD LHGIEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV  240
LFLRTADGEL RLGVRRAAQA KTCSNYLAAY SQLLNVSGIV DVVNAISSTN AFSICYNPRG  300
GSSGFVLPYH KFSKTLAHPF SAGMRFKMRV ETEDAAEQRF TGLVVGVSDV DPVRWPGSKW  360
RCLLVRWDDL DVSRHNRVSP WEIEPSGSAP VSSSLVMPSA KRTRVGFPIT KADFPIPRDG  420
IAVSDFGESS RFQKVLQGQE ILGINSPYGG FDAHSPRTGG IRCFPGFPSS GTSRMGNSIR  480
TLLGDSDKSP ESIGFSDPSR FNKVLQGQET FSTPPYGRGH AGSLMQEKSR TGIIVGIQVP  540
SHVNRWSAPN QGNRSHCNPS TLVPASSPPS VLSFQHPRSP ASKFQAMFNH KHGKLETATQ  600
ALDMSESCSR HLASGSHAED ISRKGDTQGI SSFSILKEQK QTGISYLSLG TQSSQNLVSM  660
CKTSCRIFGF PLTENKLNAT RAENPAEAVY SRGLETTFLP STDGKLQPGP PLMTNVVGTN  720
FTRVNDLYAA RDVLLDIAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT06010