PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05867

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 494aa MW: 53606.8 Da PI: 8.6207

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05867	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a+k++G W++I +++g ++t+ q++s+ qk+ OIT05867 65 RERWTEEEHKKFLEAIKLYGRA-WRRIQEHVG-TKTAVQIRSHAQKF 109 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MASAEMADQD QSGESGVDSI RSSRNGISSD VGESSTRSIQ LKEQVASADE FAPKARKPYT 60 ISKQRERWTE EEHKKFLEAI KLYGRAWRRI QEHVGTKTAV QIRSHAQKFF SKVVRESNNG 120 DASSVKPIEI PPPRPKRKPM HPYPRKLATP VKSGTLVPEK STRSISPNMS MSEQENQSPT 180 SVLSAHGSDA LGTADSSKRS GSASPVSPAG GGKSDGFVLS EPPNFILQDS SSLAQANAST 240 NPENQACMKL ELLPQEVNFV KEGSAETSST PRLKLFGKTV LVTESQRPRP TSGTCKIETK 300 VNDEAALPTA SWNLMPMKFT ASGSDCGSST LTMGTSPPFY YSPSQNENQW PTGCASATLL 360 PCGSSCASVS FPCIQVLNPI PIKGRPFFND NDLEDKQNQK EGSSTGSNTE PVSAEMGGDK 420 NMDIEAQSSQ HPLEKAREEL SSRPSETPSL VRRASSTKRV KGFVPYKRCL AERGTNPSTL 480 SGEEREEQRT RLCL

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MASAEMADQD QSGESGVDSI RSSRNGISSD VGESSTRSIQ LKEQVASADE FAPKARKPYT  60
ISKQRERWTE EEHKKFLEAI KLYGRAWRRI QEHVGTKTAV QIRSHAQKFF SKVVRESNNG  120
DASSVKPIEI PPPRPKRKPM HPYPRKLATP VKSGTLVPEK STRSISPNMS MSEQENQSPT  180
SVLSAHGSDA LGTADSSKRS GSASPVSPAG GGKSDGFVLS EPPNFILQDS SSLAQANAST  240
NPENQACMKL ELLPQEVNFV KEGSAETSST PRLKLFGKTV LVTESQRPRP TSGTCKIETK  300
VNDEAALPTA SWNLMPMKFT ASGSDCGSST LTMGTSPPFY YSPSQNENQW PTGCASATLL  360
PCGSSCASVS FPCIQVLNPI PIKGRPFFND NDLEDKQNQK EGSSTGSNTE PVSAEMGGDK  420
NMDIEAQSSQ HPLEKAREEL SSRPSETPSL VRRASSTKRV KGFVPYKRCL AERGTNPSTL  480
SGEEREEQRT RLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-57	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT05867