PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 485aa    MW: 52933.7 Da    PI: 4.2405
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05503genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.81.4e-11396420125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               Cg Cr lL YP GA++V+C++C+tV
  OIT05503 396 CGFCRQLLTYPQGAKLVKCSCCQTV 420
               9***********************9 PP

2zf-LSD1443.5e-14434458125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               CggC +lL+YP+GApsVRC++C ++
  OIT05503 434 CGGCAVLLMYPYGAPSVRCSSCRHM 458
               **********************996 PP

Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MDENLNNNEE EDEGPPPGFD SIALPLQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD  60
VEMGSKEHES EDDEDGPPPG WNIVIPQKDS PSTLPATAAV TCDIETEKKE VVEDEDNGPP  120
PGWELTPQLQ PLQTSTSPLG TQQTLLADIE MEKKEEVIED EDNGPPPGWE LTPQPLQTST  180
PPSGTQQALL AAMEKKREVV EDEDNGPPLG WQLTPQLQPL QTSPSPSGTQ QALVADIEME  240
KKEEVAEDED SGPPPGWQLI PQLQTLQTST PPLGTQQTLL ADVEMESKQH CAIEKERHPL  300
GSESIPMAGH SSPPTPPPQS SSSVASSEME MGSKQEGTKN EEVRPPIEKQ EGTKNEEVRP  360
PIEKQPTSHL PRIKPAAPQS SSHATTFSAE MGQMVCGFCR QLLTYPQGAK LVKCSCCQTV  420
NFVLEAHEVG QVKCGGCAVL LMYPYGAPSV RCSSCRHMTK IGAHNRRPPL SVQQARRRHP  480
AYQVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-34LSD family protein