PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05503

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 485aa MW: 52933.7 Da PI: 4.2405

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05503	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.8	1.4e-11	396	420	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL YP GA++V+C++C+tV OIT05503 396 CGFCRQLLTYPQGAKLVKCSCCQTV 420 9***********************9 PP
2	zf-LSD1	44	3.5e-14	434	458	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ OIT05503 434 CGGCAVLLMYPYGAPSVRCSSCRHM 458 **********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MDENLNNNEE EDEGPPPGFD SIALPLQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD 60 VEMGSKEHES EDDEDGPPPG WNIVIPQKDS PSTLPATAAV TCDIETEKKE VVEDEDNGPP 120 PGWELTPQLQ PLQTSTSPLG TQQTLLADIE MEKKEEVIED EDNGPPPGWE LTPQPLQTST 180 PPSGTQQALL AAMEKKREVV EDEDNGPPLG WQLTPQLQPL QTSPSPSGTQ QALVADIEME 240 KKEEVAEDED SGPPPGWQLI PQLQTLQTST PPLGTQQTLL ADVEMESKQH CAIEKERHPL 300 GSESIPMAGH SSPPTPPPQS SSSVASSEME MGSKQEGTKN EEVRPPIEKQ EGTKNEEVRP 360 PIEKQPTSHL PRIKPAAPQS SSHATTFSAE MGQMVCGFCR QLLTYPQGAK LVKCSCCQTV 420 NFVLEAHEVG QVKCGGCAVL LMYPYGAPSV RCSSCRHMTK IGAHNRRPPL SVQQARRRHP 480 AYQVH

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MDENLNNNEE EDEGPPPGFD SIALPLQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD  60
VEMGSKEHES EDDEDGPPPG WNIVIPQKDS PSTLPATAAV TCDIETEKKE VVEDEDNGPP  120
PGWELTPQLQ PLQTSTSPLG TQQTLLADIE MEKKEEVIED EDNGPPPGWE LTPQPLQTST  180
PPSGTQQALL AAMEKKREVV EDEDNGPPLG WQLTPQLQPL QTSPSPSGTQ QALVADIEME  240
KKEEVAEDED SGPPPGWQLI PQLQTLQTST PPLGTQQTLL ADVEMESKQH CAIEKERHPL  300
GSESIPMAGH SSPPTPPPQS SSSVASSEME MGSKQEGTKN EEVRPPIEKQ EGTKNEEVRP  360
PIEKQPTSHL PRIKPAAPQS SSHATTFSAE MGQMVCGFCR QLLTYPQGAK LVKCSCCQTV  420
NFVLEAHEVG QVKCGGCAVL LMYPYGAPSV RCSSCRHMTK IGAHNRRPPL SVQQARRRHP  480
AYQVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-34	LSD family protein

Link Out ? help Back to Top
Ensembl	OIT05503