PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04960

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 512aa MW: 58365.2 Da PI: 4.5786

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04960	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	483	501	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F ++ +L++H+ OIT04960 483 SCETCGEEFDTRNQLHKHL 501 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MQVTAFYNYW LGFVTVMDFC WVDQYDVMAG PNRKSRRVME EENKKLRKKA RREYNETVRG 60 LAEFVKKRDK RVIDMQMKRN EEMERKREKE RERKKELERE KAEKAKKYVE PDWAKAEELE 120 NEEIEEDWDE DGKKKADENE LYCVVCSKKF KSEKQWKNHE QSKKHKEKVA ALREAFDDED 180 DEYEGLVEDG VSEEQKVADG DITADLSADD GVDELAEQFE GSTRIQEDEC EDDEVQSSNE 240 DETTSKGLDD GFNYRSGSDS KEQFEGSTRI QEDECEDDEV QSSNEDETTS KGLDDGFNYR 300 SGSDSKGVVD EPGLDDDEAS LLEAMVSGRK SRKNAGPGGS RQASAKNVQA ESSNNEMDFM 360 EYNNLRSTRR NKGGRRQRNR RPQEEEDDEG GGGDVTSCAT KVGIDTELDS AYNDNSAFQG 420 LSSDSPPETA NDRKESDLSR NSEKVSSQGM DKKTTVRKEK NTKSKDATKG RKQKGTSKFS 480 GNSCETCGEE FDTRNQLHKH LGATGHAKLK SR

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MQVTAFYNYW LGFVTVMDFC WVDQYDVMAG PNRKSRRVME EENKKLRKKA RREYNETVRG  60
LAEFVKKRDK RVIDMQMKRN EEMERKREKE RERKKELERE KAEKAKKYVE PDWAKAEELE  120
NEEIEEDWDE DGKKKADENE LYCVVCSKKF KSEKQWKNHE QSKKHKEKVA ALREAFDDED  180
DEYEGLVEDG VSEEQKVADG DITADLSADD GVDELAEQFE GSTRIQEDEC EDDEVQSSNE  240
DETTSKGLDD GFNYRSGSDS KEQFEGSTRI QEDECEDDEV QSSNEDETTS KGLDDGFNYR  300
SGSDSKGVVD EPGLDDDEAS LLEAMVSGRK SRKNAGPGGS RQASAKNVQA ESSNNEMDFM  360
EYNNLRSTRR NKGGRRQRNR RPQEEEDDEG GGGDVTSCAT KVGIDTELDS AYNDNSAFQG  420
LSSDSPPETA NDRKESDLSR NSEKVSSQGM DKKTTVRKEK NTKSKDATKG RKQKGTSKFS  480
GNSCETCGEE FDTRNQLHKH LGATGHAKLK SR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	70	RKSRRVMEEENKKLRKKARREYNETVRGLAEFVKKRDK
2	44	52	KKLRKKARR
3	369	382	RRNKGGRRQRNRRP
4	370	381	RNKGGRRQRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	5e-63	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT04960