PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04523
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 188aa    MW: 22049.5 Da    PI: 4.744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04523genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013557123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C+ C++ F++   L  H++ H
  OIT04523 35 YECNFCKRGFTNAQALGGHMNIH 57
              99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MASEKNNNSS DSSSEDNDCE SEKFNDDNTG VGRSYECNFC KRGFTNAQAL GGHMNIHRKD  60
KLKAKQNYNQ ESSSIYSRKS QDQANAFDNS RYYAPISSHE QHHYYSRAQM NYQFYFQPSN  120
PSYQHVHDSR PMQENYNYFG MHDNYYDTNL SLRIEPTLID DEEEEGKKDV DVDENELDLE  180
LRLGYNNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-15C2H2 family protein